FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0464, 222 aa
  1>>>pF1KE0464 222 - 222 aa - 222 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4163+/-0.000763; mu= 8.3513+/- 0.046
 mean_var=81.9129+/-15.861, 0's: 0 Z-trim(109.2): 18  B-trim: 0 in 0/52
 Lambda= 0.141709
 statistics sampled from 10709 (10726) to 10709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.329), width:  16
 Scan time:  1.990

The best scores are:                                      opt bits E(32554)
CCDS3568.1 THAP6 gene_id:152815|Hs108|chr4         ( 222) 1533 322.6 1.2e-88
CCDS82932.1 THAP6 gene_id:152815|Hs108|chr4        ( 180)  679 148.0 3.6e-36
CCDS3598.1 THAP9 gene_id:79725|Hs108|chr4          ( 903)  310 72.8   8e-13


>>CCDS3568.1 THAP6 gene_id:152815|Hs108|chr4              (222 aa)
 initn: 1533 init1: 1533 opt: 1533  Z-score: 1704.9  bits: 322.6 E(32554): 1.2e-88
Smith-Waterman score: 1533; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KE0 MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDENIKRKWVLAMKRLDVNAAGIWEPKKGDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDENIKRKWVLAMKRLDVNAAGIWEPKKGDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LCSRHFKKTDFDRSAPNIKLKPGVIPSIFDSPYHLQGKREKLHCRKNFTLKTVPATNYNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LCSRHFKKTDFDRSAPNIKLKPGVIPSIFDSPYHLQGKREKLHCRKNFTLKTVPATNYNH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 HLVGASSCIEEFQSQFIFEHSYSVMDSPKKLKHKLDHVIGELEDTKESLRNVLDREKRFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 HLVGASSCIEEFQSQFIFEHSYSVMDSPKKLKHKLDHVIGELEDTKESLRNVLDREKRFQ
              130       140       150       160       170       180

              190       200       210       220  
pF1KE0 KSLRKTIRELKDECLISQETANRLDTFCWDCCQESIEQDYIS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS35 KSLRKTIRELKDECLISQETANRLDTFCWDCCQESIEQDYIS
              190       200       210       220  

>>CCDS82932.1 THAP6 gene_id:152815|Hs108|chr4             (180 aa)
 initn: 1231 init1: 679 opt: 679  Z-score: 762.8  bits: 148.0 E(32554): 3.6e-36
Smith-Waterman score: 1151; 81.1% identity (81.1% similar) in 222 aa overlap (1-222:1-180)

               10        20        30        40        50        60
pF1KE0 MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDENIKRKWVLAMKRLDVNAAGIWEPKKGDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDENIKRKWVLAMKRLDVNAAGIWEPKKGDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LCSRHFKKTDFDRSAPNIKLKPGVIPSIFDSPYHLQGKREKLHCRKNFTLKTVPATNYNH
       ::::::::::::::::::::::::::::::::::::                        
CCDS82 LCSRHFKKTDFDRSAPNIKLKPGVIPSIFDSPYHLQ------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KE0 HLVGASSCIEEFQSQFIFEHSYSVMDSPKKLKHKLDHVIGELEDTKESLRNVLDREKRFQ
                         ::::::::::::::::::::::::::::::::::::::::::
CCDS82 ------------------EHSYSVMDSPKKLKHKLDHVIGELEDTKESLRNVLDREKRFQ
                          100       110       120       130        

              190       200       210       220  
pF1KE0 KSLRKTIRELKDECLISQETANRLDTFCWDCCQESIEQDYIS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS82 KSLRKTIRELKDECLISQETANRLDTFCWDCCQESIEQDYIS
      140       150       160       170       180

>>CCDS3598.1 THAP9 gene_id:79725|Hs108|chr4               (903 aa)
 initn: 284 init1: 284 opt: 310  Z-score: 343.7  bits: 72.8 E(32554): 8e-13
Smith-Waterman score: 333; 32.3% identity (59.9% similar) in 217 aa overlap (1-210:1-198)

               10        20        30        40        50        60
pF1KE0 MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDENIKRKWVLAMKRLDVNAAGIWEPKKGDV
       :.. :::.::..:    :. .::.:: ::::   . ::. :..:.:  .  :: :  : .
CCDS35 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIPGPGAI
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KE0 LCSRHFKKTDFDRSAPNIKLKPGVIPSIFDSPYHL-QGKREKLHCRKNFTLKTVPATNYN
       :::.::...::.  .   ::: :..::.  : :.. :: . : . :...  . .: ..  
CCDS35 LCSKHFQESDFESYGIRRKLKKGAVPSV--SLYKIPQGVHLKGKARQKILKQPLPDNS--
               70        80          90       100       110        

     120       130       140       150        160       170        
pF1KE0 HHLVGASSCIEEFQSQFIFEHSYSVMDSPKKL-KHKLDHVIGELEDTKESLRNVLD-REK
                 .:  ..   .:.:: . .:  .  .:: .:   :. .:. : .: . :  
CCDS35 ----------QEVATE---DHNYS-LKTPLTIGAEKLAEVQQMLQVSKKRLISVKNYRMI
                  120           130       140       150       160  

       180       190       200           210       220             
pF1KE0 RFQKSLRKTIRELKDECLISQETA----NRLDTFCWDCCQESIEQDYIS           
       . .:.::  :  : .: :.:.::      ... : :.                       
CCDS35 KKRKGLR-LIDALVEEKLLSEETECLLRAQFSDFKWELYNWRETDEYSAEMKQFACTLYL
             170       180       190       200       210       220 

CCDS35 CSSKVYDYVRKILKLPHSSILRTWLSKCQPSPGFNSNIFSFLQRRVENGDQLYQYCSLLI
             230       240       250       260       270       280 




222 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:53:19 2016 done: Thu Nov  3 06:53:20 2016
 Total Scan time:  1.990 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]