FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0448, 157 aa
  1>>>pF1KE0448 157 - 157 aa - 157 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8860+/-0.000627; mu= 13.9770+/- 0.038
 mean_var=57.8363+/-11.348, 0's: 0 Z-trim(111.1): 11  B-trim: 0 in 0/49
 Lambda= 0.168645
 statistics sampled from 12080 (12088) to 12080 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.371), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS4361.1 NUDCD2 gene_id:134492|Hs108|chr5        ( 157) 1078 269.7 5.1e-73


>>CCDS4361.1 NUDCD2 gene_id:134492|Hs108|chr5             (157 aa)
 initn: 1078 init1: 1078 opt: 1078  Z-score: 1424.3  bits: 269.7 E(32554): 5.1e-73
Smith-Waterman score: 1078; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1-157)

               10        20        30        40        50        60
pF1KE0 MSAPFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSAPFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQR
               70        80        90       100       110       120

              130       140       150       
pF1KE0 KLTLERFQKENPGFDFSGAEISGNYTKGGPDFSNLEK
       :::::::::::::::::::::::::::::::::::::
CCDS43 KLTLERFQKENPGFDFSGAEISGNYTKGGPDFSNLEK
              130       140       150       




157 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:17:22 2016 done: Thu Nov  3 08:17:23 2016
 Total Scan time:  1.880 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]