FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0446, 237 aa
  1>>>pF1KE0446 237 - 237 aa - 237 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7993+/-0.00101; mu= -2.3858+/- 0.062
 mean_var=359.9398+/-71.656, 0's: 0 Z-trim(114.8): 41  B-trim: 169 in 1/54
 Lambda= 0.067602
 statistics sampled from 15313 (15344) to 15313 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.471), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS47641.1 FAM133B gene_id:257415|Hs108|chr7      ( 237) 1485 157.5 6.9e-39
CCDS47640.1 FAM133B gene_id:257415|Hs108|chr7      ( 247) 1485 157.6 7.1e-39
CCDS14466.1 FAM133A gene_id:286499|Hs108|chrX      ( 248) 1161 126.0 2.3e-29


>>CCDS47641.1 FAM133B gene_id:257415|Hs108|chr7           (237 aa)
 initn: 1485 init1: 1485 opt: 1485  Z-score: 811.6  bits: 157.5 E(32554): 6.9e-39
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KE0 MNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDIKGLSKKRKMYSEDKPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDIKGLSKKRKMYSEDKPL
              130       140       150       160       170       180

              190       200       210       220       230       
pF1KE0 SSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSKKKKKKAASSSPDSP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSKKKKKKAASSSPDSP
              190       200       210       220       230       

>>CCDS47640.1 FAM133B gene_id:257415|Hs108|chr7           (247 aa)
 initn: 1485 init1: 1485 opt: 1485  Z-score: 811.4  bits: 157.6 E(32554): 7.1e-39
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:11-247)

                         10        20        30        40        50
pF1KE0           MNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAE
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAE
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KE0 FEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSD
               70        80        90       100       110       120

              120       130       140       150       160       170
pF1KE0 SEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDIKGLSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDIKGLSKK
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KE0 RKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSKKKKKKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSKKKKKKAA
              190       200       210       220       230       240

              
pF1KE0 SSSPDSP
       :::::::
CCDS47 SSSPDSP
              

>>CCDS14466.1 FAM133A gene_id:286499|Hs108|chrX           (248 aa)
 initn: 2205 init1: 878 opt: 1161  Z-score: 640.6  bits: 126.0 E(32554): 2.3e-29
Smith-Waterman score: 1161; 81.3% identity (91.5% similar) in 235 aa overlap (1-232:11-244)

                         10        20        30        40        50
pF1KE0           MNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAE
                 :::::::: ::: :: :::::::::::::::::::.:::.:: :::::::
CCDS14 MGKRDNRVAYMNPIAMARWRGPTQSVGPTIQDYLNRPRPTWEEVKKQLENKKTGSKALAE
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KE0 FEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSD
       ::::::::::::::: :::::::.:::::::.::::.:::: : ::::::::::::::::
CCDS14 FEEKMNENWKKELEKSREKLLSGNESSSKKRERKKKRKKKSCR-SSSSSSSSDSSSSSSD
               70        80        90       100        110         

              120       130       140       150       160       170
pF1KE0 SEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDIKGLSKK
       ::::.::::::::::::::.:::.::  :.::.::.:.:::::::: ::::::...::::
CCDS14 SEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEKDVRSLSKK
     120       130       140       150       160       170         

               180       190       200       210         220       
pF1KE0 RKM-YSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKK--HKKHSKKKKK
       ::  : .:::::::: :::.: :.:.::::.  ::::.: ::.:::::  ::::::::::
CCDS14 RKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKK
     180       190       200       210       220       230         

       230       
pF1KE0 KAASSSPDSP
       :..::     
CCDS14 KSGSSHKSR 
     240         




237 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:24:41 2016 done: Thu Nov  3 08:24:42 2016
 Total Scan time:  2.690 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]