FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0415, 157 aa
  1>>>pF1KE0415 157 - 157 aa - 157 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4536+/-0.000429; mu= 15.9302+/- 0.026
 mean_var=53.3775+/-11.182, 0's: 0 Z-trim(111.0): 46  B-trim: 927 in 1/49
 Lambda= 0.175548
 statistics sampled from 19492 (19523) to 19492 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.229), width:  16
 Scan time:  4.710

The best scores are:                                      opt bits E(85289)
NP_055128 (OMIM: 605348) transmembrane protein 50A ( 157) 1084 282.3 2.1e-76
XP_011539461 (OMIM: 605348) PREDICTED: transmembra ( 157) 1084 282.3 2.1e-76
XP_005245874 (OMIM: 605348) PREDICTED: transmembra ( 126)  649 172.1 2.6e-43


>>NP_055128 (OMIM: 605348) transmembrane protein 50A [Ho  (157 aa)
 initn: 1084 init1: 1084 opt: 1084  Z-score: 1492.6  bits: 282.3 E(85289): 2.1e-76
Smith-Waterman score: 1084; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1-157)

               10        20        30        40        50        60
pF1KE0 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV
               70        80        90       100       110       120

              130       140       150       
pF1KE0 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
       :::::::::::::::::::::::::::::::::::::
NP_055 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
              130       140       150       

>>XP_011539461 (OMIM: 605348) PREDICTED: transmembrane p  (157 aa)
 initn: 1084 init1: 1084 opt: 1084  Z-score: 1492.6  bits: 282.3 E(85289): 2.1e-76
Smith-Waterman score: 1084; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1-157)

               10        20        30        40        50        60
pF1KE0 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV
               70        80        90       100       110       120

              130       140       150       
pF1KE0 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
       :::::::::::::::::::::::::::::::::::::
XP_011 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
              130       140       150       

>>XP_005245874 (OMIM: 605348) PREDICTED: transmembrane p  (126 aa)
 initn: 858 init1: 628 opt: 649  Z-score: 898.5  bits: 172.1 E(85289): 2.6e-43
Smith-Waterman score: 800; 80.3% identity (80.3% similar) in 157 aa overlap (1-157:1-126)

               10        20        30        40        50        60
pF1KE0 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV
       :::::::::::::::::::::::::::::::                             
XP_005 VIATIAFLMINAVSNGQVRGDSYSEGCLGQT-----------------------------
               70        80        90                              

              130       140       150       
pF1KE0 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
         :::::::::::::::::::::::::::::::::::
XP_005 --EKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
               100       110       120      




157 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:35:41 2016 done: Thu Nov  3 11:35:42 2016
 Total Scan time:  4.710 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]