Result of FASTA (ccds) for
pF1KE0406
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0406, 341 aa
1>>>pF1KE0406 341 - 341 aa - 341 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7355+/-0.000913; mu= 13.2420+/- 0.055
mean_var=60.6715+/-11.956, 0's: 0 Z-trim(104.7): 28 B-trim: 0 in 0/48
Lambda= 0.164658
statistics sampled from 8008 (8018) to 8008 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.246), width: 16
Scan time: 2.540
The best scores are: opt bits E(32554)
CCDS82795.1 PDHB gene_id:5162|Hs108|chr3 ( 341) 2277 549.5 1.5e-156
CCDS2890.1 PDHB gene_id:5162|Hs108|chr3 ( 359) 2200 531.2 4.9e-151
CCDS54602.1 PDHB gene_id:5162|Hs108|chr3 ( 341) 1434 349.2 2.8e-96
CCDS4994.1 BCKDHB gene_id:594|Hs108|chr6 ( 392) 630 158.3 1e-38
>>CCDS82795.1 PDHB gene_id:5162|Hs108|chr3 (341 aa)
initn: 2277 init1: 2277 opt: 2277 Z-score: 2924.3 bits: 549.5 E(32554): 1.5e-156
Smith-Waterman score: 2277; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)
10 20 30 40 50 60
pF1KE0 MAAVSGLVRRPLREVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAAVSGLVRRPLREVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 DKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 EGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFL
250 260 270 280 290 300
310 320 330 340
pF1KE0 DAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI
:::::::::::::::::::::::::::::::::::::::::
CCDS82 DAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI
310 320 330 340
>>CCDS2890.1 PDHB gene_id:5162|Hs108|chr3 (359 aa)
initn: 2192 init1: 2192 opt: 2200 Z-score: 2825.0 bits: 531.2 E(32554): 4.9e-151
Smith-Waterman score: 2231; 95.0% identity (95.0% similar) in 359 aa overlap (1-341:1-359)
10 20 30 40
pF1KE0 MAAVSGLVRRPLREV------------------TVRDAINQGMDEELERDEKVFLLGEEV
::::::::::::::: :::::::::::::::::::::::::::
CCDS28 MAAVSGLVRRPLREVSGLLKRRFHWTAPAALQVTVRDAINQGMDEELERDEKVFLLGEEV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 AQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 AQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 DQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 DQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 EDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 EDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVV
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE0 SHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 SHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE0 VGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 VGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI
310 320 330 340 350
>>CCDS54602.1 PDHB gene_id:5162|Hs108|chr3 (341 aa)
initn: 1419 init1: 1399 opt: 1434 Z-score: 1842.0 bits: 349.2 E(32554): 2.8e-96
Smith-Waterman score: 2059; 90.0% identity (90.0% similar) in 359 aa overlap (1-341:1-341)
10 20 30 40
pF1KE0 MAAVSGLVRRPLREV------------------TVRDAINQGMDEELERDEKVFLLGEEV
::::::::::::::: :::::::::::::::::::::::::::
CCDS54 MAAVSGLVRRPLREVSGLLKRRFHWTAPAALQVTVRDAINQGMDEELERDEKVFLLGEEV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 AQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 DQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNS
::::::::::::::: :::::::::::::::::::::::::::
CCDS54 DQVINSAAKTYYMSG------------------VAAQHSQCFAAWYGHCPGLKVVSPWNS
130 140 150 160
170 180 190 200 210 220
pF1KE0 EDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVV
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE0 SHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFG
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE0 VGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI
290 300 310 320 330 340
>>CCDS4994.1 BCKDHB gene_id:594|Hs108|chr6 (392 aa)
initn: 464 init1: 178 opt: 630 Z-score: 808.8 bits: 158.3 E(32554): 1e-38
Smith-Waterman score: 630; 34.4% identity (66.8% similar) in 331 aa overlap (13-340:69-391)
10 20 30 40
pF1KE0 MAAVSGLVRRPLREVTVRDAINQGMDEELERDEKVFLLGEEV
..... .......:. : .: . ..::.:
CCDS49 AATVEDAAQRRQVAHFTFQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDV
40 50 60 70 80 90
50 60 70 80 90 100
pF1KE0 AQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAI
: . :... . :: ::: :...::. :.:..:...: :..: : :.. .. . :.
CCDS49 A-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAF
100 110 120 130 140 150
110 120 130 140 150 160
pF1KE0 DQVINSAAKTYYMSGGLQPV-PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWN
::..: ::: : :: : ...:.: : . : ::: :...::::.::: : .
CCDS49 DQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRS
160 170 180 190 200 210
170 180 190 200 210 220
pF1KE0 SEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITV
.::::. : :.:.:: . .: ...: . : :. . . ::...:.. ..:. .:.
CCDS49 PFQAKGLLLSCIEDKNPCIFFEPKILYRAAAE---EVPIEPYNIPLSQAEVIQEGSDVTL
220 230 240 250 260 270
230 240 250 260 270
pF1KE0 VSHSRPVGHCLEAAAVLSKE--GVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWP
:. . : : .. .: ..:: :: ::::..::: : :..:: ::.::..:. . .
CCDS49 VAWGTQV-HVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPL
280 290 300 310 320 330
280 290 300 310 320 330
pF1KE0 QFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTL
: ..:: . ..: : :.:: :: : :.:.:. :.: ::. :..: .
CCDS49 TGGFASEISSTVQE-ECFLNLEAPISRVCGYDTPFPH--IFEPFYIPDKWKCYDALRKMI
340 350 360 370 380 390
340
pF1KE0 NI
:
CCDS49 NY
341 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:09:16 2016 done: Thu Nov 3 12:09:16 2016
Total Scan time: 2.540 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]