Result of FASTA (omim) for
pF1KE0401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0401, 205 aa
1>>>pF1KE0401 205 - 205 aa - 205 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6861+/-0.00039; mu= 2.5238+/- 0.024
mean_var=123.4404+/-24.938, 0's: 0 Z-trim(115.9): 9 B-trim: 107 in 2/53
Lambda= 0.115437
statistics sampled from 26720 (26729) to 26720 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.313), width: 16
Scan time: 5.800
The best scores are: opt bits E(85289)
NP_001245149 (OMIM: 609178) protein MIS12 homolog ( 205) 1351 235.6 4.2e-62
NP_001245147 (OMIM: 609178) protein MIS12 homolog ( 205) 1351 235.6 4.2e-62
XP_016880522 (OMIM: 609178) PREDICTED: protein MIS ( 205) 1351 235.6 4.2e-62
NP_001245146 (OMIM: 609178) protein MIS12 homolog ( 205) 1351 235.6 4.2e-62
XP_016880524 (OMIM: 609178) PREDICTED: protein MIS ( 205) 1351 235.6 4.2e-62
NP_001245148 (OMIM: 609178) protein MIS12 homolog ( 205) 1351 235.6 4.2e-62
XP_005256854 (OMIM: 609178) PREDICTED: protein MIS ( 205) 1351 235.6 4.2e-62
XP_016880523 (OMIM: 609178) PREDICTED: protein MIS ( 205) 1351 235.6 4.2e-62
NP_076944 (OMIM: 609178) protein MIS12 homolog [Ho ( 205) 1351 235.6 4.2e-62
>>NP_001245149 (OMIM: 609178) protein MIS12 homolog [Hom (205 aa)
initn: 1351 init1: 1351 opt: 1351 Z-score: 1235.9 bits: 235.6 E(85289): 4.2e-62
Smith-Waterman score: 1351; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE0 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
130 140 150 160 170 180
190 200
pF1KE0 LVQNSRKLQNIRDNVEKESKRLKIS
:::::::::::::::::::::::::
NP_001 LVQNSRKLQNIRDNVEKESKRLKIS
190 200
>>NP_001245147 (OMIM: 609178) protein MIS12 homolog [Hom (205 aa)
initn: 1351 init1: 1351 opt: 1351 Z-score: 1235.9 bits: 235.6 E(85289): 4.2e-62
Smith-Waterman score: 1351; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE0 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
130 140 150 160 170 180
190 200
pF1KE0 LVQNSRKLQNIRDNVEKESKRLKIS
:::::::::::::::::::::::::
NP_001 LVQNSRKLQNIRDNVEKESKRLKIS
190 200
>>XP_016880522 (OMIM: 609178) PREDICTED: protein MIS12 h (205 aa)
initn: 1351 init1: 1351 opt: 1351 Z-score: 1235.9 bits: 235.6 E(85289): 4.2e-62
Smith-Waterman score: 1351; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE0 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
130 140 150 160 170 180
190 200
pF1KE0 LVQNSRKLQNIRDNVEKESKRLKIS
:::::::::::::::::::::::::
XP_016 LVQNSRKLQNIRDNVEKESKRLKIS
190 200
>>NP_001245146 (OMIM: 609178) protein MIS12 homolog [Hom (205 aa)
initn: 1351 init1: 1351 opt: 1351 Z-score: 1235.9 bits: 235.6 E(85289): 4.2e-62
Smith-Waterman score: 1351; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE0 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
130 140 150 160 170 180
190 200
pF1KE0 LVQNSRKLQNIRDNVEKESKRLKIS
:::::::::::::::::::::::::
NP_001 LVQNSRKLQNIRDNVEKESKRLKIS
190 200
>>XP_016880524 (OMIM: 609178) PREDICTED: protein MIS12 h (205 aa)
initn: 1351 init1: 1351 opt: 1351 Z-score: 1235.9 bits: 235.6 E(85289): 4.2e-62
Smith-Waterman score: 1351; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE0 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
130 140 150 160 170 180
190 200
pF1KE0 LVQNSRKLQNIRDNVEKESKRLKIS
:::::::::::::::::::::::::
XP_016 LVQNSRKLQNIRDNVEKESKRLKIS
190 200
>>NP_001245148 (OMIM: 609178) protein MIS12 homolog [Hom (205 aa)
initn: 1351 init1: 1351 opt: 1351 Z-score: 1235.9 bits: 235.6 E(85289): 4.2e-62
Smith-Waterman score: 1351; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE0 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
130 140 150 160 170 180
190 200
pF1KE0 LVQNSRKLQNIRDNVEKESKRLKIS
:::::::::::::::::::::::::
NP_001 LVQNSRKLQNIRDNVEKESKRLKIS
190 200
>>XP_005256854 (OMIM: 609178) PREDICTED: protein MIS12 h (205 aa)
initn: 1351 init1: 1351 opt: 1351 Z-score: 1235.9 bits: 235.6 E(85289): 4.2e-62
Smith-Waterman score: 1351; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE0 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
130 140 150 160 170 180
190 200
pF1KE0 LVQNSRKLQNIRDNVEKESKRLKIS
:::::::::::::::::::::::::
XP_005 LVQNSRKLQNIRDNVEKESKRLKIS
190 200
>>XP_016880523 (OMIM: 609178) PREDICTED: protein MIS12 h (205 aa)
initn: 1351 init1: 1351 opt: 1351 Z-score: 1235.9 bits: 235.6 E(85289): 4.2e-62
Smith-Waterman score: 1351; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE0 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
130 140 150 160 170 180
190 200
pF1KE0 LVQNSRKLQNIRDNVEKESKRLKIS
:::::::::::::::::::::::::
XP_016 LVQNSRKLQNIRDNVEKESKRLKIS
190 200
>>NP_076944 (OMIM: 609178) protein MIS12 homolog [Homo s (205 aa)
initn: 1351 init1: 1351 opt: 1351 Z-score: 1235.9 bits: 235.6 E(85289): 4.2e-62
Smith-Waterman score: 1351; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE0 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
130 140 150 160 170 180
190 200
pF1KE0 LVQNSRKLQNIRDNVEKESKRLKIS
:::::::::::::::::::::::::
NP_076 LVQNSRKLQNIRDNVEKESKRLKIS
190 200
205 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:21:09 2016 done: Thu Nov 3 12:21:10 2016
Total Scan time: 5.800 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]