FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0401, 205 aa
  1>>>pF1KE0401 205 - 205 aa - 205 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9900+/-0.000984; mu= 6.4741+/- 0.059
 mean_var=112.0536+/-22.350, 0's: 0 Z-trim(108.5): 3  B-trim: 367 in 1/52
 Lambda= 0.121161
 statistics sampled from 10277 (10278) to 10277 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.316), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS11074.1 MIS12 gene_id:79003|Hs108|chr17        ( 205) 1351 246.4 9.4e-66


>>CCDS11074.1 MIS12 gene_id:79003|Hs108|chr17             (205 aa)
 initn: 1351 init1: 1351 opt: 1351  Z-score: 1294.0  bits: 246.4 E(32554): 9.4e-66
Smith-Waterman score: 1351; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KE0 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RKCTEKFLCFMKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVS
              130       140       150       160       170       180

              190       200     
pF1KE0 LVQNSRKLQNIRDNVEKESKRLKIS
       :::::::::::::::::::::::::
CCDS11 LVQNSRKLQNIRDNVEKESKRLKIS
              190       200     




205 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:21:09 2016 done: Thu Nov  3 12:21:09 2016
 Total Scan time:  2.050 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]