FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0391, 1197 aa
  1>>>pF1KE0391 1197 - 1197 aa - 1197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6703+/-0.00116; mu= 19.4246+/- 0.070
 mean_var=57.6066+/-11.468, 0's: 0 Z-trim(99.1): 42  B-trim: 0 in 0/51
 Lambda= 0.168981
 statistics sampled from 5625 (5629) to 5625 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.509), E-opt: 0.2 (0.173), width:  16
 Scan time:  4.120

The best scores are:                                      opt bits E(32554)
CCDS76588.1 CFAP54 gene_id:144535|Hs108|chr12      (3096) 7671 1879.4       0


>>CCDS76588.1 CFAP54 gene_id:144535|Hs108|chr12           (3096 aa)
 initn: 7712 init1: 7671 opt: 7671  Z-score: 10084.9  bits: 1879.4 E(32554):    0
Smith-Waterman score: 7671; 99.6% identity (99.7% similar) in 1191 aa overlap (1-1191:1576-2766)

                                             10        20        30
pF1KE0                               MSDENMSKTQTVYDSDSQSGSSAKEKDRGA
                                     ::::::::::::::::::::::::::::::
CCDS76 AMLDFLLTAKKRKANLPSDAEEFSTFINSIMSDENMSKTQTVYDSDSQSGSSAKEKDRGA
        1550      1560      1570      1580      1590      1600     

               40        50        60        70        80        90
pF1KE0 NLCVMDHFMKIFLYCRRAMVLAHRGGYWTLLQNCCRALWNFTQELQILLKQAVDLDKTFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NLCVMDHFMKIFLYCRRAMVLAHRGGYWTLLQNCCRALWNFTQELQILLKQAVDLDKTFP
        1610      1620      1630      1640      1650      1660     

              100       110       120       130       140       150
pF1KE0 ISQDGFLCTSVLPFYLGAELLIDMLIQLQNTSSIKPIEDKGEFSVPSCYGNIKNDNGGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ISQDGFLCTSVLPFYLGAELLIDMLIQLQNTSSIKPIEDKGEFSVPSCYGNIKNDNGGSS
        1670      1680      1690      1700      1710      1720     

              160       170       180       190       200       210
pF1KE0 LTFEHPLDDVNVVDLKWIHDFVLKSLEVLYQVEKWETLVSLAIQFNTVSHERYTEQVTPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LTFEHPLDDVNVVDLKWIHDFVLKSLEVLYQVEKWETLVSLAIQFNTVSHERYTEQVTPL
        1730      1740      1750      1760      1770      1780     

              220       230       240       250       260       270
pF1KE0 LVYAQRQLLLRIQKFKGPDITQQPCARYEAEYGEKITCRNFIGKQLKINSSTIEATSNCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LVYAQRQLLLRIQKFKGPDITQQPCARYEAEYGEKITCRNFIGKQLKINSSTIEATSNCT
        1790      1800      1810      1820      1830      1840     

              280       290       300       310       320       330
pF1KE0 DLLKMLISSEYSRAKALVCVPVDVTDTLRCFRETLEKSKYHNRSIRHSRKLLSLFLAQTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DLLKMLISSEYSRAKALVCVPVDVTDTLRCFRETLEKSKYHNRSIRHSRKLLSLFLAQTQ
        1850      1860      1870      1880      1890      1900     

              340       350       360       370       380       390
pF1KE0 DVLQASNQRSLKVQALHSLGSLLIFAEKKRAAFKCWCQALDDIFRKPDVLHTWKEFGPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DVLQASNQRSLKVQALHSLGSLLIFAEKKRAAFKCWCQALDDIFRKPDVLHTWKEFGPSL
        1910      1920      1930      1940      1950      1960     

              400       410       420       430       440       450
pF1KE0 TNVTNSHSPPGFKDYSEEFLSRVGIWGCLQGAVISAKIAQFIKSLNVEKKTDCCILSALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 TNVTNSHSPPGFKDYSEEFLSRVGIWGCLQGAVISAKIAQFIKSLNVEKKTDCCILSALL
        1970      1980      1990      2000      2010      2020     

              460       470       480       490       500       510
pF1KE0 FQGLLRTTLPHPKAERCYAQYEITQLLPGIELFSDRYRADICSVIASLYYIIRELHFVRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FQGLLRTTLPHPKAERCYAQYEITQLLPGIELFSDRYRADICSVIASLYYIIRELHFVRQ
        2030      2040      2050      2060      2070      2080     

              520       530       540       550       560       570
pF1KE0 NLIVLPLLALYQYFVSGICQDITRNLEARILKIEVLIDLRFFSEAFYEISQIFYGKNMPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NLIVLPLLALYQYFVSGICQDITRNLEARILKIEVLIDLRFFSEAFYEISQIFYGKNMPC
        2090      2100      2110      2120      2130      2140     

              580       590       600       610       620       630
pF1KE0 PIPAGYKATGKMKIFQSFDSGKLLTSKENIQAIDELRNKGLPAVLVTIGQPHLLNKFNFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PIPAGYKATGKMKIFQSFDSGKLLTSKENIQAIDELRNKGLPAVLVTIGQPHLLNKFNFV
        2150      2160      2170      2180      2190      2200     

              640       650       660       670       680       690
pF1KE0 KAYFFLSVAATINCVPENKFKTVITNKSKPNLPNLEEIYSKDDGSSFYNLTKLKDEITLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KAYFFLSVAATINCVPENKFKTVITNKSKPNLPNLEEIYSKDDGSSFYNLTKLKDEITLS
        2210      2220      2230      2240      2250      2260     

              700       710       720       730       740       750
pF1KE0 MLKSMLLMEAEDRLNFLLSEVEQKTLSQCSAGELEIVVEARLQLAAVALQRHRAAYSAAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MLKSMLLMEAEDRLNFLLSEVEQKTLSQCSAGELEIVVEARLQLAAVALQRHRAAYSAAI
        2270      2280      2290      2300      2310      2320     

              760       770       780       790       800       810
pF1KE0 VFSTLTLLQDSKLFEKKVVQDDTENPVSPGTSVTENKDDSEFLDPISLNAREYFNIHLWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VFSTLTLLQDSKLFEKKVVQDDTENPVSPGTSVTENKDDSEFLDPISLNAREYFNIHLWL
        2330      2340      2350      2360      2370      2380     

              820       830       840       850       860       870
pF1KE0 RCRLALVTAFVAQIHGIGIVKEDDMTDCLSLINEVCMEAKSAGDTELQAEFLTQAVILGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RCRLALVTAFVAQIHGIGIVKEDDMTDCLSLINEVCMEAKSAGDTELQAEFLTQAVILGL
        2390      2400      2410      2420      2430      2440     

              880       890       900       910       920       930
pF1KE0 QEKHLKADIMTNLQDIIHLLEGNEFISPQSRLTLARSLVLLDDLTKAEKFKESPSSKTGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QEKHLKADIMTNLQDIIHLLEGNEFISPQSRLTLARSLVLLDDLTKAEKFKESPSSKTGK
        2450      2460      2470      2480      2490      2500     

              940       950       960       970       980       990
pF1KE0 LNLLTRAHSILTEQMLAFGETIEFRSSNTKYANPLQPLKNIYLPHVMLLAKIKMRIGHTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LNLLTRAHSILTEQMLAFGETIEFRSSNTKYANPLQPLKNIYLPHVMLLAKIKMRIGHTV
        2510      2520      2530      2540      2550      2560     

             1000      1010      1020      1030      1040      1050
pF1KE0 AKQVYYKNKRKDPSKWLPALHLFDVALKLCRTTAVEEHEVEAEILFQKGKIERQILMEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AKQVYYKNKRKDPSKWLPALHLFDVALKLCRTTAVEEHEVEAEILFQKGKIERQILMEEK
        2570      2580      2590      2600      2610      2620     

             1060      1070      1080      1090      1100      1110
pF1KE0 SPSFQLESLYEAIQLSLKNDQNSGLIRDSYLEMALLYFHLKKPKIKISGSPLTLKPPLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SPSFQLESLYEAIQLSLKNDQNSGLIRDSYLEMALLYFHLKKPKIKISGSPLTLKPPLRR
        2630      2640      2650      2660      2670      2680     

             1120      1130      1140      1150      1160      1170
pF1KE0 SSSVKETSANKFEMYSSLAWIAIRAAAQVSEAVLAINLLIGKKNTRMHKVNQVALPNIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SSSVKETSANKFEMYSSLAWIAIRAAAQVSEAVLAINLLIGKKNTRMHKVNQVALPNIPE
        2690      2700      2710      2720      2730      2740     

             1180      1190                                        
pF1KE0 FAALDLLSSYTDYLLGMFGCLHIMQKN                                 
       :::::::::::::::  .  :                                       
CCDS76 FAALDLLSSYTDYLLDNYQVLFQTSCTFLYQNDDVCDSADGRKKTQTKVDITWILLLRYY
        2750      2760      2770      2780      2790      2800     




1197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:41:26 2016 done: Thu Nov  3 12:41:27 2016
 Total Scan time:  4.120 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]