FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0389, 836 aa
  1>>>pF1KE0389 836 - 836 aa - 836 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1424+/-0.000943; mu= 12.9206+/- 0.057
 mean_var=126.9500+/-25.074, 0's: 0 Z-trim(109.8): 7  B-trim: 0 in 0/53
 Lambda= 0.113830
 statistics sampled from 11142 (11144) to 11142 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.342), width:  16
 Scan time:  4.030

The best scores are:                                      opt bits E(32554)
CCDS2727.1 CDCP1 gene_id:64866|Hs108|chr3          ( 836) 5639 937.8       0
CCDS46812.1 CDCP1 gene_id:64866|Hs108|chr3         ( 343) 2289 387.4 2.2e-107


>>CCDS2727.1 CDCP1 gene_id:64866|Hs108|chr3               (836 aa)
 initn: 5639 init1: 5639 opt: 5639  Z-score: 5009.0  bits: 937.8 E(32554):    0
Smith-Waterman score: 5639; 100.0% identity (100.0% similar) in 836 aa overlap (1-836:1-836)

               10        20        30        40        50        60
pF1KE0 MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GTVSRIKMQEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GTVSRIKMQEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 QPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNESNKIYVVDLSNERAMSLTIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNESNKIYVVDLSNERAMSLTIE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 PRPVKQSRKFVPGCFVCLESRTCSSNLTLTSGSKHKISFLCDDLTRLWMNVEKTISCTDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PRPVKQSRKFVPGCFVCLESRTCSSNLTLTSGSKHKISFLCDDLTRLWMNVEKTISCTDH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 RYCQRKSYSLQVPSDILHLPVELHDFSWKLLVPKDRLSLVLVPAQKLQQHTHEKPCNTSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RYCQRKSYSLQVPSDILHLPVELHDFSWKLLVPKDRLSLVLVPAQKLQQHTHEKPCNTSF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 SYLVASAIPSQDLYFGSFCPGGSIKQIQVKQNISVTLRTFAPSFQQEASRQGLTVSFIPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SYLVASAIPSQDLYFGSFCPGGSIKQIQVKQNISVTLRTFAPSFQQEASRQGLTVSFIPY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 FKEEGVFTVTPDTKSKVYLRTPNWDRGLPSLTSVSWNISVPRDQVACLTFFKERSGVVCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 FKEEGVFTVTPDTKSKVYLRTPNWDRGLPSLTSVSWNISVPRDQVACLTFFKERSGVVCQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 TGRAFMIIQEQRTRAEEIFSLDEDVLPKPSFHHHSFWVNISNCSPTSGKQLDLLFSVTLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 TGRAFMIIQEQRTRAEEIFSLDEDVLPKPSFHHHSFWVNISNCSPTSGKQLDLLFSVTLT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 PRTVDLTVILIAAVGGGVLLLSALGLIICCVKKKKKKTNKGPAVGIYNDNINTEMPRQPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PRTVDLTVILIAAVGGGVLLLSALGLIICCVKKKKKKTNKGPAVGIYNDNINTEMPRQPK
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 KFQKGRKDNDSHVYAVIEDTMVYGHLLQDSSGSFLQPEVDTYRPFQGTMGVCPPSPPTIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KFQKGRKDNDSHVYAVIEDTMVYGHLLQDSSGSFLQPEVDTYRPFQGTMGVCPPSPPTIC
              730       740       750       760       770       780

              790       800       810       820       830      
pF1KE0 SRAPTAKLATEEPPPRSPPESESEPYTFSHPNNGDVSSKDTDIPLLNTQEPMEPAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SRAPTAKLATEEPPPRSPPESESEPYTFSHPNNGDVSSKDTDIPLLNTQEPMEPAE
              790       800       810       820       830      

>>CCDS46812.1 CDCP1 gene_id:64866|Hs108|chr3              (343 aa)
 initn: 2289 init1: 2289 opt: 2289  Z-score: 2041.4  bits: 387.4 E(32554): 2.2e-107
Smith-Waterman score: 2289; 99.4% identity (100.0% similar) in 343 aa overlap (1-343:1-343)

               10        20        30        40        50        60
pF1KE0 MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GTVSRIKMQEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GTVSRIKMQEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 QPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNESNKIYVVDLSNERAMSLTIE
       :::::::::::::::::::::::::::::::::::::::::..                 
CCDS46 QPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNESSE                 
              310       320       330       340                    

              370       380       390       400       410       420
pF1KE0 PRPVKQSRKFVPGCFVCLESRTCSSNLTLTSGSKHKISFLCDDLTRLWMNVEKTISCTDH




836 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:49:53 2016 done: Thu Nov  3 12:49:53 2016
 Total Scan time:  4.030 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]