Result of FASTA (omim) for
pF1KE0384
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0384, 489 aa
1>>>pF1KE0384 489 - 489 aa - 489 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4837+/-0.000347; mu= 6.4048+/- 0.022
mean_var=237.0323+/-48.545, 0's: 0 Z-trim(121.6): 10 B-trim: 878 in 2/56
Lambda= 0.083305
statistics sampled from 38517 (38527) to 38517 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.452), width: 16
Scan time: 11.880
The best scores are: opt bits E(85289)
NP_055108 (OMIM: 609474) neuronal pentraxin recept ( 500) 3277 406.6 8.2e-113
NP_002514 (OMIM: 600750) neuronal pentraxin-2 prec ( 431) 1422 183.6 9.6e-46
NP_002513 (OMIM: 602367) neuronal pentraxin-1 prec ( 432) 1266 164.9 4.2e-40
NP_699197 (OMIM: 611691) sushi, von Willebrand fac (3571) 457 68.5 3.5e-10
NP_002843 (OMIM: 602492) pentraxin-related protein ( 381) 347 54.4 6.9e-07
NP_001013680 (OMIM: 613442) pentraxin-4 isoform 2 ( 473) 348 54.6 7.4e-07
NP_001315537 (OMIM: 613442) pentraxin-4 isoform 1 ( 478) 348 54.6 7.4e-07
NP_001315986 (OMIM: 123260) C-reactive protein iso ( 224) 281 46.2 0.00012
NP_000558 (OMIM: 123260) C-reactive protein isofor ( 224) 281 46.2 0.00012
NP_001630 (OMIM: 104770) serum amyloid P-component ( 223) 267 44.5 0.00037
>>NP_055108 (OMIM: 609474) neuronal pentraxin receptor [ (500 aa)
initn: 3277 init1: 3277 opt: 3277 Z-score: 2146.3 bits: 406.6 E(85289): 8.2e-113
Smith-Waterman score: 3277; 100.0% identity (100.0% similar) in 489 aa overlap (1-489:12-500)
10 20 30 40
pF1KE0 MLAFLGAVICIIASVPLAASPARALPGGADNASVASGAAASPGPQRSLS
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MKFLAVLLAAGMLAFLGAVICIIASVPLAASPARALPGGADNASVASGAAASPGPQRSLS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 ALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGER
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 EELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 DGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSAVPTGLHSKMDQLEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSAVPTGLHSKMDQLEG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE0 QLLAQVLALEKERVALSHSSRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISIPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QLLAQVLALEKERVALSHSSRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISIPI
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE0 RNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPME
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE0 LLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGIL
370 380 390 400 410 420
410 420 430 440 450 460
pF1KE0 ILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLV
430 440 450 460 470 480
470 480
pF1KE0 EAFGGATKAAFDVCKGRAKA
::::::::::::::::::::
NP_055 EAFGGATKAAFDVCKGRAKA
490 500
>>NP_002514 (OMIM: 600750) neuronal pentraxin-2 precurso (431 aa)
initn: 1387 init1: 798 opt: 1422 Z-score: 942.2 bits: 183.6 E(85289): 9.6e-46
Smith-Waterman score: 1422; 51.5% identity (77.4% similar) in 429 aa overlap (66-486:12-427)
40 50 60 70 80
pF1KE0 SGAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLP-PGPLFSRFLCTPLA-----
: ::.:. : :: :::.:: :
NP_002 MLALLAASVALAVAAGAQDSPAPG---SRFVCTALPPEAVH
10 20 30
90 100 110 120 130 140
pF1KE0 AACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGR
:.:: :. :.: . .::: .... :::.:..::. . :....::::::::.:
NP_002 AGCPLPAMP--MQGGAQSPEEEL---RAAVLQLRETVVQQKETLGAQREAIRELTGKLAR
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 CESGLPRG-LQGAGPR-RDTMADGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLS
:: :: : .::: .:::.: : : .. .: ....:.::.. ::..: : :. .
NP_002 CE-GLAGGKARGAGATGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLEHQLRANVSNA
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE0 AAPAPVSAVPTGLHSKMDQLEGQLLAQVLALEKERVALSHSSRRQRQEVEKELDVLQGRV
. :. : :.... .:: ::: .: :: :. : . . .::..:. :..: ::
NP_002 GLPGDFREV---LQQRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRV
160 170 180 190 200
270 280 290 300 310 320
pF1KE0 AELEHGSSAYSPPDAFKISIPIRNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPF
.:::.:.::.. :::::.:.:.:.::.:....:.:::::::: :.:::: :.. : ::::
NP_002 TELERGNSAFKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRS-SASPGIGTPF
210 220 230 240 250 260
330 340 350 360 370 380
pF1KE0 SYSVPGQANEIVLLEAGHEPMELLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQD
::.::::::::::.: :..:.::::::::::::: ..:. :::::..::::::.: :.::
NP_002 SYAVPGQANEIVLIEWGNNPIELLINDKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQD
270 280 290 300 310 320
390 400 410 420 430 440
pF1KE0 GELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQV
:: :.::::: :::::: :.:::::::::.::::::::::::...:::.::..: ..
NP_002 GEKLGTGENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEI
330 340 350 360 370 380
450 460 470 480
pF1KE0 LGIANCTAPLLGNVLPWEDKLVEAFGGATKAAFDVCKGRAKA
..::::.. . ::..:: :. :..::::.: ..:. :
NP_002 VNIANCSTNMPGNIIPWVDNNVDVFGGASKWPVETCEERLLDL
390 400 410 420 430
>>NP_002513 (OMIM: 602367) neuronal pentraxin-1 precurso (432 aa)
initn: 1128 init1: 690 opt: 1266 Z-score: 840.9 bits: 164.9 E(85289): 4.2e-40
Smith-Waterman score: 1266; 48.7% identity (74.8% similar) in 421 aa overlap (77-484:26-429)
50 60 70 80 90 100
pF1KE0 SLSALHGAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAP
:: .::.:: . : :.. :. ::
NP_002 MPAGRAARTCALLALCLLGAGAQDFGP--TRFICTSV----PVDADMCAASVAAG
10 20 30 40
110 120 130 140 150
pF1KE0 GEREELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCES--------GLPR--
: .: :.:.. :::.:.:::. : ....::::::.::::::: : :
NP_002 GAEE----LRSSVLQLRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAG
50 60 70 80 90 100
160 170 180 190 200 210
pF1KE0 -GLQGAGPRRDTMADGPWDSPALIL-ELEDAVRALRDRIDRLEQELPARVNLSAAPAPVS
: . : ..::.: : : .: .....:. :.. ::: .:.: :. ..
NP_002 GGRKQPGSGKNTMGDLSRTPAAETLSQLGQTLQSLKTRLENLEQY--SRLNSSSQTNSLK
110 120 130 140 150 160
220 230 240 250 260 270
pF1KE0 AVPTGLHSKMDQLEGQLLAQVLALEKERVALSHSSRRQRQEVEKELDVLQGRVAELEHGS
. :.::.:.:: :.:..: .::. . . ... ..: ..: : :. :..:::.:.
NP_002 DL---LQSKIDELERQVLSRVNTLEEGKGG-PRNDTEERVKIETALTSLHQRISELEKGQ
170 180 190 200 210
280 290 300 310 320 330
pF1KE0 SAYSPPDAFKISIPIRNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQ
. : : :....:.:.:::::.:.:.:::.::::.::::.: :. : ::::::.::::
NP_002 KDNRPGDKFQLTFPLRTNYMYAKVKKSLPEMYAFTVCMWLKS-SATPGVGTPFSYAVPGQ
220 230 240 250 260 270
340 350 360 370 380 390
pF1KE0 ANEIVLLEAGHEPMELLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSG
:::.::.: :..:::.:::::::.::. ..:. :::::..::::::.: ::::: :::
NP_002 ANELVLIEWGNNPMEILINDKVAKLPFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSG
280 290 300 310 320 330
400 410 420 430 440 450
pF1KE0 ENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANC-
:::: .:::::.:.:.:::::::::: :::::::::..:.::.::. :::..: ..:.:
NP_002 ENLAPYHPIKPQGVLVLGQEQDTLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLATCS
340 350 360 370 380 390
460 470 480
pF1KE0 TAPLLGNVLPWEDKLVEAFGGATKAAFDVCKGRAKA
: : :::. : .. .: .::::: .:..:.
NP_002 TKALSGNVIAWAESHIEIYGGATKWTFEACRQIN
400 410 420 430
>>NP_699197 (OMIM: 611691) sushi, von Willebrand factor (3571 aa)
initn: 376 init1: 331 opt: 457 Z-score: 303.8 bits: 68.5 E(85289): 3.5e-10
Smith-Waterman score: 457; 39.0% identity (69.2% similar) in 195 aa overlap (283-473:1426-1617)
260 270 280 290 300 310
pF1KE0 RQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISIPIRNNYMYARVRKALPELYAFTACM
:.... . . : :. . :: :.:.: .
NP_699 ATCVDELNSYSCKCQPGFSGKRCETEQSTGFNLDFEVSGIYGYVMLDGMLPSLHALTCTF
1400 1410 1420 1430 1440 1450
320 330 340 350 360 370
pF1KE0 WLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPMELLIN--DKVAQLPLSLKDNGWHH
:..: :. . :::.::.: . ... .:: . .. : .: .:... : :..:. :::
NP_699 WMKS-SDDMNYGTPISYAVDNGSDNTLLL-TDYNGWVLYVNGREKITNCP-SVNDGRWHH
1460 1470 1480 1490 1500 1510
380 390 400 410 420 430
pF1KE0 ICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVG
: :.::. .:.:..: ::.:. .: .:.. :: : :.:::::: : :. ...:::
NP_699 IAITWTSANGIWKVYIDGKLSDGGAGLSVGLPIPGGGALVLGQEQDKKGEGFSPAESFVG
1520 1530 1540 1550 1560 1570
440 450 460 470 480
pF1KE0 DIAQFNLWDHALTPAQVLGIA-NCTAPLL-GNVLPWEDKLVEAFGGATKAAFDVCKGRAK
.:.:.::::..:.: :: ..: .: : :::: : : : :
NP_699 SISQLNLWDYVLSPQQVKSLATSCPEELSKGNVLAWPDFLSGIVGKVKIDSKSIFCSDCP
1580 1590 1600 1610 1620 1630
pF1KE0 A
NP_699 RLGGSVPHLRTASEDLKPGSKVNLFCDPGFQLVGNPVQYCLNQGQWTQPLPHCERISCGV
1640 1650 1660 1670 1680 1690
>>NP_002843 (OMIM: 602492) pentraxin-related protein PTX (381 aa)
initn: 198 init1: 97 opt: 347 Z-score: 244.7 bits: 54.4 E(85289): 6.9e-07
Smith-Waterman score: 356; 28.3% identity (58.3% similar) in 321 aa overlap (178-475:72-377)
150 160 170 180 190 200
pF1KE0 GRCESGLPRGLQGAGPRRDTMADGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLS
..:. : : :: ...::..:: ..
NP_002 EDPTPCACGQEHSEWDKLFIMLENSQMRERMLLQATDDV--LRGELQRLREELGRLAESL
50 60 70 80 90
210 220 230 240 250
pF1KE0 AAP-APVSAVPTGLHSKMDQL------EGQLLAQVLALEKERV-----ALSHSSRRQRQE
: : :: . . . : : .:.: :. ::.. . : .: ::. .. ::
NP_002 ARPCAPGAPAEARLTSALDELLQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQ-
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE0 VEKELDVLQGRVAELEHGSSAYSPPDA-FKISIPIRNNYMYARVRKALP-ELYAFTACMW
.. .: ..:: .:. .. : : .:.:.. ... :. . : .: .:.::.:
NP_002 TRADLHAVQGWAAR------SWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIW
160 170 180 190 200 210
320 330 340 350 360
pF1KE0 LRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPMELLI----NDKVAQLPLSLKDNGWH
... .. .. :::.. . :: : ... . ... : ::. .:: . :
NP_002 VKA-TDVLNKTILFSYGTKRNPYEI-QLYLSYQSIVFVVGGEENKLVAEAMVSL--GRWT
220 230 240 250 260
370 380 390 400 410 420
pF1KE0 HICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQD--TLGGRFDATQA
:.: .:....:: : . .::: .. ..:. : . ::: .:::.. .:: :: : :
NP_002 HLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLA
270 280 290 300 310 320
430 440 450 460 470 480
pF1KE0 FVGDIAQFNLWDHALTPAQVL---GIANCTAPLLGNVLPWEDKLVEAFGGATKAAFDVCK
: : .. ::.:: .:. .. : .: . ::.. : .. :::
NP_002 FSGRLTGFNIWDSVLSNEEIRETGGAESCH--IRGNIVGWGVTEIQPHGGAQYVS
330 340 350 360 370 380
pF1KE0 GRAKA
>>NP_001013680 (OMIM: 613442) pentraxin-4 isoform 2 [Hom (473 aa)
initn: 313 init1: 276 opt: 348 Z-score: 244.1 bits: 54.6 E(85289): 7.4e-07
Smith-Waterman score: 392; 28.2% identity (54.6% similar) in 401 aa overlap (115-486:92-471)
90 100 110 120 130 140
pF1KE0 CTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEARIRADQDTIRELT
.:. ::. . . . : : . .: :
NP_001 NVSYNVDVRFRSLAEESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRALD
70 80 90 100 110 120
150 160 170 180 190 200
pF1KE0 GKLGRCESGLPRGLQGAGPRRDTMADGPWDSPALILELEDAVRALRDRIDRLEQELPARV
::. . : .. .::.. :. . .:: :.. :. :: .::.
NP_001 LTLGERSQQRARERKAHKAQRDALQDS-------LARLEGLVHSQGARLAALEGRLPVAH
130 140 150 160 170
210 220 230 240 250 260
pF1KE0 NLSAAPAPVSAVPTGLHSKMDQLEGQLLAQVLALEKERVALSHSSRRQRQEVEKELDVLQ
.:: .: . ::: . . .: : :...: : .:. .: . ::
NP_001 PGTAALGP-ALVPTPTQPE------ELGPTSLKLQRDRQELRAASE-HRGPPQDSSAPLQ
180 190 200 210 220
270 280 290 300
pF1KE0 GRVAELEHGS----SAYSPPD----AFKISIP-----IRNNYMY--ARVRKAL---P---
:: :: :. .: : :.. ..: . . .. : .:... :
NP_001 GRREPPASGSHRVLSGTAPKDPRQQAWSPQVPGEICGVGPTLVFPNASTRNVVFLSPGFV
230 240 250 260 270 280
310 320 330 340 350
pF1KE0 -ELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPM-----ELLINDKV-
: :.. : :.:. .:: :: .::.. . :..:: :.. . ...:.: .
NP_001 TALRALSFCSWVRT-ASGR-LGTLLSYATEDNDNKLVL--HGRDSLLPGSIHFVIGDPAF
290 300 310 320 330 340
360 370 380 390 400 410
pF1KE0 AQLPLSLKDNG-WHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQ
.:::.: .: :::::. ::. .: . . : .: ..: . . : : : :.:::::
NP_001 RELPLQLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQ
350 360 370 380 390 400
420 430 440 450 460 470
pF1KE0 DTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLVEAFGGA
:..:: ::...::::... . .::.::.:..: ..: : .: . . ::
NP_001 DSVGGGFDSSEAFVGSMSGLAIWDRALVPGEVANLAIGKEFPTGAILTLANAALA--GGF
410 420 430 440 450 460
480
pF1KE0 TKAAFDVCKGRAKA
...: .: :
NP_001 VQGANCTCLERCP
470
>>NP_001315537 (OMIM: 613442) pentraxin-4 isoform 1 prec (478 aa)
initn: 313 init1: 276 opt: 348 Z-score: 244.1 bits: 54.6 E(85289): 7.4e-07
Smith-Waterman score: 392; 28.2% identity (54.6% similar) in 401 aa overlap (115-486:97-476)
90 100 110 120 130 140
pF1KE0 CTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEARIRADQDTIRELT
.:. ::. . . . : : . .: :
NP_001 NVSYNVDVRFRSLAEESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRALD
70 80 90 100 110 120
150 160 170 180 190 200
pF1KE0 GKLGRCESGLPRGLQGAGPRRDTMADGPWDSPALILELEDAVRALRDRIDRLEQELPARV
::. . : .. .::.. :. . .:: :.. :. :: .::.
NP_001 LTLGERSQQRARERKAHKAQRDALQDS-------LARLEGLVHSQGARLAALEGRLPVAH
130 140 150 160 170
210 220 230 240 250 260
pF1KE0 NLSAAPAPVSAVPTGLHSKMDQLEGQLLAQVLALEKERVALSHSSRRQRQEVEKELDVLQ
.:: .: . ::: . . .: : :...: : .:. .: . ::
NP_001 PGTAALGP-ALVPTPTQPE------ELGPTSLKLQRDRQELRAASE-HRGPPQDSSAPLQ
180 190 200 210 220 230
270 280 290 300
pF1KE0 GRVAELEHGS----SAYSPPD----AFKISIP-----IRNNYMY--ARVRKAL---P---
:: :: :. .: : :.. ..: . . .. : .:... :
NP_001 GRREPPASGSHRVLSGTAPKDPRQQAWSPQVPGEICGVGPTLVFPNASTRNVVFLSPGFV
240 250 260 270 280 290
310 320 330 340 350
pF1KE0 -ELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPM-----ELLINDKV-
: :.. : :.:. .:: :: .::.. . :..:: :.. . ...:.: .
NP_001 TALRALSFCSWVRT-ASGR-LGTLLSYATEDNDNKLVL--HGRDSLLPGSIHFVIGDPAF
300 310 320 330 340
360 370 380 390 400 410
pF1KE0 AQLPLSLKDNG-WHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQ
.:::.: .: :::::. ::. .: . . : .: ..: . . : : : :.:::::
NP_001 RELPLQLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQ
350 360 370 380 390 400
420 430 440 450 460 470
pF1KE0 DTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLVEAFGGA
:..:: ::...::::... . .::.::.:..: ..: : .: . . ::
NP_001 DSVGGGFDSSEAFVGSMSGLAIWDRALVPGEVANLAIGKEFPTGAILTLANAALA--GGF
410 420 430 440 450 460
480
pF1KE0 TKAAFDVCKGRAKA
...: .: :
NP_001 VQGANCTCLERCP
470
>>NP_001315986 (OMIM: 123260) C-reactive protein isoform (224 aa)
initn: 255 init1: 165 opt: 281 Z-score: 204.7 bits: 46.2 E(85289): 0.00012
Smith-Waterman score: 281; 27.6% identity (59.6% similar) in 203 aa overlap (274-473:14-214)
250 260 270 280 290 300
pF1KE0 ALSHSSRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISI--PIRNNYMYARVRKA
: :.. : . .. : ... :. ..
NP_001 MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAP
10 20 30 40
310 320 330 340 350 360
pF1KE0 LPE-LYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPMELLINDKVAQLP
: . : :::.:. . .. :.: . :::.. : :::... . . . .. . .
NP_001 LTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFE
50 60 70 80 90 100
370 380 390 400 410 420
pF1KE0 LSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTLGG
. . ::: .: . .:. . ::. . ..: . . .. .:::::::..::
NP_001 VPEVTVAPVHICTSWESASGIVEFWVDGKPR-VRKSLKKGYTVGAEASIILGQEQDSFGG
110 120 130 140 150 160
430 440 450 460 470 480
pF1KE0 RFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLVEAFGGATKAAF
:...:..::::.. :.:: .:.: .. : .:. ::: :. :. :
NP_001 NFEGSQSLVGDIGNVNMWDFVLSPDEINTIY-LGGPFSPNVLNWRALKYEVQGEVFTKPQ
170 180 190 200 210 220
pF1KE0 DVCKGRAKA
NP_001 LWP
>>NP_000558 (OMIM: 123260) C-reactive protein isoform 1 (224 aa)
initn: 255 init1: 165 opt: 281 Z-score: 204.7 bits: 46.2 E(85289): 0.00012
Smith-Waterman score: 281; 27.6% identity (59.6% similar) in 203 aa overlap (274-473:14-214)
250 260 270 280 290 300
pF1KE0 ALSHSSRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISI--PIRNNYMYARVRKA
: :.. : . .. : ... :. ..
NP_000 MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAP
10 20 30 40
310 320 330 340 350 360
pF1KE0 LPE-LYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPMELLINDKVAQLP
: . : :::.:. . .. :.: . :::.. : :::... . . . .. . .
NP_000 LTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFE
50 60 70 80 90 100
370 380 390 400 410 420
pF1KE0 LSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTLGG
. . ::: .: . .:. . ::. . ..: . . .. .:::::::..::
NP_000 VPEVTVAPVHICTSWESASGIVEFWVDGKPR-VRKSLKKGYTVGAEASIILGQEQDSFGG
110 120 130 140 150 160
430 440 450 460 470 480
pF1KE0 RFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLVEAFGGATKAAF
:...:..::::.. :.:: .:.: .. : .:. ::: :. :. :
NP_000 NFEGSQSLVGDIGNVNMWDFVLSPDEINTIY-LGGPFSPNVLNWRALKYEVQGEVFTKPQ
170 180 190 200 210 220
pF1KE0 DVCKGRAKA
NP_000 LWP
>>NP_001630 (OMIM: 104770) serum amyloid P-component pre (223 aa)
initn: 190 init1: 159 opt: 267 Z-score: 195.7 bits: 44.5 E(85289): 0.00037
Smith-Waterman score: 267; 30.9% identity (61.1% similar) in 162 aa overlap (305-465:49-205)
280 290 300 310 320 330
pF1KE0 SAYSPPDAFKISIPIRNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQ
: :: : .:. :. . . :::.. :.
NP_001 AHTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLC--FRAYSDLSRAYSLFSYNTQGR
20 30 40 50 60 70
340 350 360 370 380 390
pF1KE0 ANEIVLLEAGHEPMELLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGE-LQGS
::... . . : :. . . . : . :::..: . .:. . .: : .
NP_001 DNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKK
80 90 100 110 120 130
400 410 420 430 440 450
pF1KE0 GENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANC
: . . .:. ..::::::. ::.:: .:.:::.:... .:: .: : ..:. .
NP_001 GLRQGYFVEAQPK--IVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQG
140 150 160 170 180 190
460 470 480
pF1KE0 TAPLLGNVLPWEDKLVEAFGGATKAAFDVCKGRAKA
: :: .:.: :.
NP_001 T-PLPANILDWQALNYEIRGYVIIKPLVWV
200 210 220
489 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:02:26 2016 done: Thu Nov 3 13:02:28 2016
Total Scan time: 11.880 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]