Result of FASTA (omim) for
pF1KE0372
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0372, 565 aa
1>>>pF1KE0372 565 - 565 aa - 565 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1548+/-0.000474; mu= 13.6346+/- 0.029
mean_var=67.6189+/-13.866, 0's: 0 Z-trim(109.6): 57 B-trim: 72 in 1/50
Lambda= 0.155970
statistics sampled from 17745 (17786) to 17745 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.577), E-opt: 0.2 (0.209), width: 16
Scan time: 8.300
The best scores are: opt bits E(85289)
NP_694996 (OMIM: 611916) collagen alpha-5(VI) chai (2526) 3782 860.6 0
XP_011510923 (OMIM: 611916) PREDICTED: collagen al (2594) 3767 857.3 0
NP_001265227 (OMIM: 611916) collagen alpha-5(VI) c (2614) 3767 857.3 0
XP_011510728 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0 1e-60
XP_016861202 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0 1e-60
XP_011510727 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0 1e-60
XP_005247178 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0 1e-60
XP_016861200 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0 1e-60
XP_016861204 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0 1e-60
XP_016861201 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0 1e-60
XP_011510730 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0 1e-60
XP_016861203 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0 1e-60
NP_001096078 (OMIM: 616613) collagen alpha-6(VI) c (2263) 1006 236.0 1e-60
XP_011510726 (OMIM: 616613) PREDICTED: collagen al (2279) 1006 236.0 1e-60
XP_011510725 (OMIM: 616613) PREDICTED: collagen al (2279) 1006 236.0 1e-60
XP_016858793 (OMIM: 120250,158810,254090,616411) P (2375) 341 86.3 1.2e-15
NP_476507 (OMIM: 120250,158810,254090,616411) coll (2570) 341 86.4 1.3e-15
XP_005246123 (OMIM: 120250,158810,254090,616411) P (2770) 341 86.4 1.3e-15
NP_476508 (OMIM: 120250,158810,254090,616411) coll (2971) 341 86.4 1.4e-15
XP_016858792 (OMIM: 120250,158810,254090,616411) P (2971) 341 86.4 1.4e-15
XP_005246122 (OMIM: 120250,158810,254090,616411) P (2977) 341 86.4 1.4e-15
XP_006712316 (OMIM: 120250,158810,254090,616411) P (3010) 341 86.4 1.5e-15
XP_011508876 (OMIM: 120250,158810,254090,616411) P (3176) 341 86.4 1.5e-15
NP_004360 (OMIM: 120250,158810,254090,616411) coll (3177) 341 86.4 1.5e-15
NP_001839 (OMIM: 120220,158810,254090) collagen al (1028) 157 44.9 0.0015
>>NP_694996 (OMIM: 611916) collagen alpha-5(VI) chain is (2526 aa)
initn: 3782 init1: 3782 opt: 3782 Z-score: 4586.3 bits: 860.6 E(85289): 0
Smith-Waterman score: 3782; 100.0% identity (100.0% similar) in 565 aa overlap (1-565:1962-2526)
10 20 30
pF1KE0 MDVVFLIDNSRNIAKDEFKAVKALVSSVID
::::::::::::::::::::::::::::::
NP_694 LERLRRCALCYDKCFPNACIREAFLPEDSYMDVVFLIDNSRNIAKDEFKAVKALVSSVID
1940 1950 1960 1970 1980 1990
40 50 60 70 80 90
pF1KE0 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
2000 2010 2020 2030 2040 2050
100 110 120 130 140 150
pF1KE0 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
2060 2070 2080 2090 2100 2110
160 170 180 190 200 210
pF1KE0 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
2120 2130 2140 2150 2160 2170
220 230 240 250 260 270
pF1KE0 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
2180 2190 2200 2210 2220 2230
280 290 300 310 320 330
pF1KE0 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
2240 2250 2260 2270 2280 2290
340 350 360 370 380 390
pF1KE0 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
2300 2310 2320 2330 2340 2350
400 410 420 430 440 450
pF1KE0 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
2360 2370 2380 2390 2400 2410
460 470 480 490 500 510
pF1KE0 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
2420 2430 2440 2450 2460 2470
520 530 540 550 560
pF1KE0 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
2480 2490 2500 2510 2520
>>XP_011510923 (OMIM: 611916) PREDICTED: collagen alpha- (2594 aa)
initn: 3767 init1: 3767 opt: 3767 Z-score: 4567.8 bits: 857.3 E(85289): 0
Smith-Waterman score: 3767; 100.0% identity (100.0% similar) in 564 aa overlap (1-564:1941-2504)
10 20 30
pF1KE0 MDVVFLIDNSRNIAKDEFKAVKALVSSVID
::::::::::::::::::::::::::::::
XP_011 LERLRRCALCYDKCFPNACIREAFLPEDSYMDVVFLIDNSRNIAKDEFKAVKALVSSVID
1920 1930 1940 1950 1960 1970
40 50 60 70 80 90
pF1KE0 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
1980 1990 2000 2010 2020 2030
100 110 120 130 140 150
pF1KE0 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
2040 2050 2060 2070 2080 2090
160 170 180 190 200 210
pF1KE0 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
2100 2110 2120 2130 2140 2150
220 230 240 250 260 270
pF1KE0 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
2160 2170 2180 2190 2200 2210
280 290 300 310 320 330
pF1KE0 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
2220 2230 2240 2250 2260 2270
340 350 360 370 380 390
pF1KE0 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
2280 2290 2300 2310 2320 2330
400 410 420 430 440 450
pF1KE0 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
2340 2350 2360 2370 2380 2390
460 470 480 490 500 510
pF1KE0 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
2400 2410 2420 2430 2440 2450
520 530 540 550 560
pF1KE0 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLLLPGIY
2460 2470 2480 2490 2500 2510
XP_011 EIKTENGDLFDEFDSQAQHLLVLGNNHSSGSETATDLMQKLYLLFSTEKLAMKDKEKAHL
2520 2530 2540 2550 2560 2570
>>NP_001265227 (OMIM: 611916) collagen alpha-5(VI) chain (2614 aa)
initn: 3767 init1: 3767 opt: 3767 Z-score: 4567.8 bits: 857.3 E(85289): 0
Smith-Waterman score: 3767; 100.0% identity (100.0% similar) in 564 aa overlap (1-564:1962-2525)
10 20 30
pF1KE0 MDVVFLIDNSRNIAKDEFKAVKALVSSVID
::::::::::::::::::::::::::::::
NP_001 LERLRRCALCYDKCFPNACIREAFLPEDSYMDVVFLIDNSRNIAKDEFKAVKALVSSVID
1940 1950 1960 1970 1980 1990
40 50 60 70 80 90
pF1KE0 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
2000 2010 2020 2030 2040 2050
100 110 120 130 140 150
pF1KE0 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
2060 2070 2080 2090 2100 2110
160 170 180 190 200 210
pF1KE0 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
2120 2130 2140 2150 2160 2170
220 230 240 250 260 270
pF1KE0 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
2180 2190 2200 2210 2220 2230
280 290 300 310 320 330
pF1KE0 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
2240 2250 2260 2270 2280 2290
340 350 360 370 380 390
pF1KE0 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
2300 2310 2320 2330 2340 2350
400 410 420 430 440 450
pF1KE0 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
2360 2370 2380 2390 2400 2410
460 470 480 490 500 510
pF1KE0 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
2420 2430 2440 2450 2460 2470
520 530 540 550 560
pF1KE0 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLLLPGIY
2480 2490 2500 2510 2520 2530
NP_001 EIKTENGDLFDEFDSQAQHLLVLGNNHSSGSETATDLMQKLYLLFSTEKLAMKDKEKAHL
2540 2550 2560 2570 2580 2590
>>XP_011510728 (OMIM: 616613) PREDICTED: collagen alpha- (2263 aa)
initn: 1137 init1: 644 opt: 1006 Z-score: 1211.2 bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)
290 300 310 320 330 340
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
.:: . . . . :::.:::.:::. .
XP_011 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
1920 1930 1940 1950 1960 1970
350 360 370 380 390 400
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
:: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. :: ::.:.
XP_011 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
1980 1990 2000 2010 2020 2030
410 420 430 440 450 460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
:: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_011 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
2040 2050 2060 2070 2080 2090
470 480 490 500 510 520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
: ..:.. :::::::::..::::.:: .:::::.::::::::::::::: :::: .: .
XP_011 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
2100 2110 2120 2130 2140 2150
530 540 550 560
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
:::: :.. ::::::::: ..: : ..: .:.
XP_011 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
2160 2170 2180 2190 2200 2210
XP_011 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
2220 2230 2240 2250 2260
>>XP_016861202 (OMIM: 616613) PREDICTED: collagen alpha- (2263 aa)
initn: 1137 init1: 644 opt: 1006 Z-score: 1211.2 bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)
290 300 310 320 330 340
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
.:: . . . . :::.:::.:::. .
XP_016 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
1920 1930 1940 1950 1960 1970
350 360 370 380 390 400
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
:: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. :: ::.:.
XP_016 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
1980 1990 2000 2010 2020 2030
410 420 430 440 450 460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
:: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_016 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
2040 2050 2060 2070 2080 2090
470 480 490 500 510 520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
: ..:.. :::::::::..::::.:: .:::::.::::::::::::::: :::: .: .
XP_016 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
2100 2110 2120 2130 2140 2150
530 540 550 560
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
:::: :.. ::::::::: ..: : ..: .:.
XP_016 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
2160 2170 2180 2190 2200 2210
XP_016 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
2220 2230 2240 2250 2260
>>XP_011510727 (OMIM: 616613) PREDICTED: collagen alpha- (2263 aa)
initn: 1137 init1: 644 opt: 1006 Z-score: 1211.2 bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)
290 300 310 320 330 340
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
.:: . . . . :::.:::.:::. .
XP_011 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
1920 1930 1940 1950 1960 1970
350 360 370 380 390 400
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
:: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. :: ::.:.
XP_011 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
1980 1990 2000 2010 2020 2030
410 420 430 440 450 460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
:: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_011 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
2040 2050 2060 2070 2080 2090
470 480 490 500 510 520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
: ..:.. :::::::::..::::.:: .:::::.::::::::::::::: :::: .: .
XP_011 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
2100 2110 2120 2130 2140 2150
530 540 550 560
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
:::: :.. ::::::::: ..: : ..: .:.
XP_011 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
2160 2170 2180 2190 2200 2210
XP_011 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
2220 2230 2240 2250 2260
>>XP_005247178 (OMIM: 616613) PREDICTED: collagen alpha- (2263 aa)
initn: 1137 init1: 644 opt: 1006 Z-score: 1211.2 bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)
290 300 310 320 330 340
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
.:: . . . . :::.:::.:::. .
XP_005 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
1920 1930 1940 1950 1960 1970
350 360 370 380 390 400
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
:: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. :: ::.:.
XP_005 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
1980 1990 2000 2010 2020 2030
410 420 430 440 450 460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
:: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_005 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
2040 2050 2060 2070 2080 2090
470 480 490 500 510 520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
: ..:.. :::::::::..::::.:: .:::::.::::::::::::::: :::: .: .
XP_005 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
2100 2110 2120 2130 2140 2150
530 540 550 560
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
:::: :.. ::::::::: ..: : ..: .:.
XP_005 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
2160 2170 2180 2190 2200 2210
XP_005 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
2220 2230 2240 2250 2260
>>XP_016861200 (OMIM: 616613) PREDICTED: collagen alpha- (2263 aa)
initn: 1137 init1: 644 opt: 1006 Z-score: 1211.2 bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)
290 300 310 320 330 340
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
.:: . . . . :::.:::.:::. .
XP_016 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
1920 1930 1940 1950 1960 1970
350 360 370 380 390 400
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
:: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. :: ::.:.
XP_016 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
1980 1990 2000 2010 2020 2030
410 420 430 440 450 460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
:: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_016 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
2040 2050 2060 2070 2080 2090
470 480 490 500 510 520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
: ..:.. :::::::::..::::.:: .:::::.::::::::::::::: :::: .: .
XP_016 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
2100 2110 2120 2130 2140 2150
530 540 550 560
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
:::: :.. ::::::::: ..: : ..: .:.
XP_016 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
2160 2170 2180 2190 2200 2210
XP_016 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
2220 2230 2240 2250 2260
>>XP_016861204 (OMIM: 616613) PREDICTED: collagen alpha- (2263 aa)
initn: 1137 init1: 644 opt: 1006 Z-score: 1211.2 bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)
290 300 310 320 330 340
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
.:: . . . . :::.:::.:::. .
XP_016 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
1920 1930 1940 1950 1960 1970
350 360 370 380 390 400
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
:: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. :: ::.:.
XP_016 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
1980 1990 2000 2010 2020 2030
410 420 430 440 450 460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
:: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_016 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
2040 2050 2060 2070 2080 2090
470 480 490 500 510 520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
: ..:.. :::::::::..::::.:: .:::::.::::::::::::::: :::: .: .
XP_016 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
2100 2110 2120 2130 2140 2150
530 540 550 560
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
:::: :.. ::::::::: ..: : ..: .:.
XP_016 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
2160 2170 2180 2190 2200 2210
XP_016 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
2220 2230 2240 2250 2260
>>XP_016861201 (OMIM: 616613) PREDICTED: collagen alpha- (2263 aa)
initn: 1137 init1: 644 opt: 1006 Z-score: 1211.2 bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)
290 300 310 320 330 340
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
.:: . . . . :::.:::.:::. .
XP_016 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
1920 1930 1940 1950 1960 1970
350 360 370 380 390 400
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
:: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. :: ::.:.
XP_016 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
1980 1990 2000 2010 2020 2030
410 420 430 440 450 460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
:: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_016 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
2040 2050 2060 2070 2080 2090
470 480 490 500 510 520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
: ..:.. :::::::::..::::.:: .:::::.::::::::::::::: :::: .: .
XP_016 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
2100 2110 2120 2130 2140 2150
530 540 550 560
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
:::: :.. ::::::::: ..: : ..: .:.
XP_016 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
2160 2170 2180 2190 2200 2210
XP_016 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
2220 2230 2240 2250 2260
565 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:37:54 2016 done: Thu Nov 3 13:37:56 2016
Total Scan time: 8.300 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]