Result of FASTA (ccds) for
pF1KE0372
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0372, 565 aa
1>>>pF1KE0372 565 - 565 aa - 565 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1639+/-0.00114; mu= 13.2880+/- 0.068
mean_var=61.1922+/-12.410, 0's: 0 Z-trim(102.3): 37 B-trim: 243 in 1/48
Lambda= 0.163956
statistics sampled from 6856 (6874) to 6856 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.579), E-opt: 0.2 (0.211), width: 16
Scan time: 3.150
The best scores are: opt bits E(32554)
CCDS46911.1 COL6A6 gene_id:131873|Hs108|chr3 (2263) 1006 246.9 2e-64
CCDS33410.2 COL6A3 gene_id:1293|Hs108|chr2 (2570) 341 89.6 5e-17
CCDS33409.1 COL6A3 gene_id:1293|Hs108|chr2 (2971) 341 89.6 5.8e-17
CCDS33412.1 COL6A3 gene_id:1293|Hs108|chr2 (3177) 341 89.6 6.2e-17
>>CCDS46911.1 COL6A6 gene_id:131873|Hs108|chr3 (2263 aa)
initn: 1137 init1: 644 opt: 1006 Z-score: 1270.3 bits: 246.9 E(32554): 2e-64
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)
290 300 310 320 330 340
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
.:: . . . . :::.:::.:::. .
CCDS46 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
1920 1930 1940 1950 1960 1970
350 360 370 380 390 400
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
:: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. :: ::.:.
CCDS46 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
1980 1990 2000 2010 2020 2030
410 420 430 440 450 460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
:: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
CCDS46 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
2040 2050 2060 2070 2080 2090
470 480 490 500 510 520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
: ..:.. :::::::::..::::.:: .:::::.::::::::::::::: :::: .: .
CCDS46 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
2100 2110 2120 2130 2140 2150
530 540 550 560
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
:::: :.. ::::::::: ..: : ..: .:.
CCDS46 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
2160 2170 2180 2190 2200 2210
CCDS46 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
2220 2230 2240 2250 2260
>>CCDS33410.2 COL6A3 gene_id:1293|Hs108|chr2 (2570 aa)
initn: 405 init1: 190 opt: 341 Z-score: 419.2 bits: 89.6 E(32554): 5e-17
Smith-Waterman score: 341; 28.3% identity (63.9% similar) in 219 aa overlap (329-546:2011-2229)
300 310 320 330 340 350
pF1KE0 SLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRVGSDEFKEVKAFITSVLD
.:.::..:... . .:.:.: .:. ..
CCDS33 LDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVR
1990 2000 2010 2020 2030 2040
360 370 380 390 400 410
pF1KE0 YFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLVTYNSIHQMKHHLQDSQ-
. ..: : .: ::::....: . :. :: .::.:. :.: ... :. ..
CCDS33 QLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMT
2050 2060 2070 2080 2090 2100
420 430 440 450 460 470
pF1KE0 QLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSLDKDVLRNVSLRAKCQGY
::.: .: :...::.::: ..:: : :.. .. .::. . . . : :.:::.::
CCDS33 QLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGY
2110 2120 2130 2140 2150 2160
480 490 500 510 520 530
pF1KE0 SIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYIIKFVKPFVHLIRRAINKY
. :...: : : ::. .::.: : . . .. . . . ...: . . .. :
CCDS33 FFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFY
2170 2180 2190 2200 2210 2220
540 550 560
pF1KE0 PTEDMKATCVNMTSPNPENGGTENTVLW
. :.. :
CCDS33 LSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTT
2230 2240 2250 2260 2270 2280
>>CCDS33409.1 COL6A3 gene_id:1293|Hs108|chr2 (2971 aa)
initn: 374 init1: 190 opt: 341 Z-score: 418.0 bits: 89.6 E(32554): 5.8e-17
Smith-Waterman score: 341; 28.3% identity (63.9% similar) in 219 aa overlap (329-546:2412-2630)
300 310 320 330 340 350
pF1KE0 SLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRVGSDEFKEVKAFITSVLD
.:.::..:... . .:.:.: .:. ..
CCDS33 LDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVR
2390 2400 2410 2420 2430 2440
360 370 380 390 400 410
pF1KE0 YFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLVTYNSIHQMKHHLQDSQ-
. ..: : .: ::::....: . :. :: .::.:. :.: ... :. ..
CCDS33 QLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMT
2450 2460 2470 2480 2490 2500
420 430 440 450 460 470
pF1KE0 QLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSLDKDVLRNVSLRAKCQGY
::.: .: :...::.::: ..:: : :.. .. .::. . . . : :.:::.::
CCDS33 QLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGY
2510 2520 2530 2540 2550 2560
480 490 500 510 520 530
pF1KE0 SIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYIIKFVKPFVHLIRRAINKY
. :...: : : ::. .::.: : . . .. . . . ...: . . .. :
CCDS33 FFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFY
2570 2580 2590 2600 2610 2620
540 550 560
pF1KE0 PTEDMKATCVNMTSPNPENGGTENTVLW
. :.. :
CCDS33 LSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTT
2630 2640 2650 2660 2670 2680
>>CCDS33412.1 COL6A3 gene_id:1293|Hs108|chr2 (3177 aa)
initn: 374 init1: 190 opt: 341 Z-score: 417.5 bits: 89.6 E(32554): 6.2e-17
Smith-Waterman score: 341; 28.3% identity (63.9% similar) in 219 aa overlap (329-546:2618-2836)
300 310 320 330 340 350
pF1KE0 SLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRVGSDEFKEVKAFITSVLD
.:.::..:... . .:.:.: .:. ..
CCDS33 LDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVR
2590 2600 2610 2620 2630 2640
360 370 380 390 400 410
pF1KE0 YFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLVTYNSIHQMKHHLQDSQ-
. ..: : .: ::::....: . :. :: .::.:. :.: ... :. ..
CCDS33 QLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMT
2650 2660 2670 2680 2690 2700
420 430 440 450 460 470
pF1KE0 QLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSLDKDVLRNVSLRAKCQGY
::.: .: :...::.::: ..:: : :.. .. .::. . . . : :.:::.::
CCDS33 QLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGY
2710 2720 2730 2740 2750 2760
480 490 500 510 520 530
pF1KE0 SIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYIIKFVKPFVHLIRRAINKY
. :...: : : ::. .::.: : . . .. . . . ...: . . .. :
CCDS33 FFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFY
2770 2780 2790 2800 2810 2820
540 550 560
pF1KE0 PTEDMKATCVNMTSPNPENGGTENTVLW
. :.. :
CCDS33 LSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTT
2830 2840 2850 2860 2870 2880
565 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:37:54 2016 done: Thu Nov 3 13:37:54 2016
Total Scan time: 3.150 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]