FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0368, 655 aa
  1>>>pF1KE0368 655 - 655 aa - 655 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2243+/-0.000797; mu= 20.5148+/- 0.048
 mean_var=74.7266+/-14.972, 0's: 0 Z-trim(109.3): 18  B-trim: 0 in 0/49
 Lambda= 0.148367
 statistics sampled from 10778 (10784) to 10778 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.331), width:  16
 Scan time:  3.690

The best scores are:                                      opt bits E(32554)
CCDS3332.1 LMLN gene_id:89782|Hs108|chr3           ( 655) 4596 993.3       0
CCDS46988.1 LMLN gene_id:89782|Hs108|chr3          ( 692) 2816 612.3 7.2e-175


>>CCDS3332.1 LMLN gene_id:89782|Hs108|chr3                (655 aa)
 initn: 4596 init1: 4596 opt: 4596  Z-score: 5312.4  bits: 993.3 E(32554):    0
Smith-Waterman score: 4596; 100.0% identity (100.0% similar) in 655 aa overlap (1-655:1-655)

               10        20        30        40        50        60
pF1KE0 MVTTLGPKMAAEWGGGVGYSGSGPGRSRWRWSGSVWVRSVLLLLGGLRASATSTPVSLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MVTTLGPKMAAEWGGGVGYSGSGPGRSRWRWSGSVWVRSVLLLLGGLRASATSTPVSLGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SPPCRHHVPSDTEVINKVHLKANHVVKRDVDEHLRIKTVYDKSVEELLPEKKNLVKNKLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SPPCRHHVPSDTEVINKVHLKANHVVKRDVDEHLRIKTVYDKSVEELLPEKKNLVKNKLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PQAISYLEKTFQVRRPAGTILLSRQCATNQYLRKENDPHRYCTGECAAHTKCGPVIVPEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PQAISYLEKTFQVRRPAGTILLSRQCATNQYLRKENDPHRYCTGECAAHTKCGPVIVPEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 HLQQCRVYRGGKWPHGAVGVPDQEGISDADFVLYVGALATERCSHENIISYAAYCQQEAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HLQQCRVYRGGKWPHGAVGVPDQEGISDADFVLYVGALATERCSHENIISYAAYCQQEAN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MDRPIAGYANLCPNMISTQPQEFVGMLSTVKHEVIHALGFSAGLFAFYHDKDGNPLTSRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MDRPIAGYANLCPNMISTQPQEFVGMLSTVKHEVIHALGFSAGLFAFYHDKDGNPLTSRF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ADGLPPFNYSLGLYQWSDKVVRKVERLWDVRDNKIVRHTVYLLVTPRVVEEARKHFDCPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ADGLPPFNYSLGLYQWSDKVVRKVERLWDVRDNKIVRHTVYLLVTPRVVEEARKHFDCPV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 LEGMELENQGGVGTELNHWEKRLLENEAMTGSHTQNRVLSRITLALMEDTGRQMLSPYCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LEGMELENQGGVGTELNHWEKRLLENEAMTGSHTQNRVLSRITLALMEDTGRQMLSPYCD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 TLRSNPLQLTCRQDQRAVAVCNLQKFPKPLPQEYQYFDELSGIPAEDLPYYGGSVEIADY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TLRSNPLQLTCRQDQRAVAVCNLQKFPKPLPQEYQYFDELSGIPAEDLPYYGGSVEIADY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 CPFSQEFSWHLSGEYQRSSDCRILENQPEIFKNYGAEKYGPHSVCLIQKSAFVMEKCERK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CPFSQEFSWHLSGEYQRSSDCRILENQPEIFKNYGAEKYGPHSVCLIQKSAFVMEKCERK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 LSYPDWGSGCYQVSCSPQGLKVWVQDTSYLCSRAGQVLPVSIQMNGWIHDGNLLCPSCWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LSYPDWGSGCYQVSCSPQGLKVWVQDTSYLCSRAGQVLPVSIQMNGWIHDGNLLCPSCWD
              550       560       570       580       590       600

              610       620       630       640       650     
pF1KE0 FCELCPPETDPPATNLTRALPLDLCSCSSSLVVTLWLLLGNLFPLLAGFLLCIWH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FCELCPPETDPPATNLTRALPLDLCSCSSSLVVTLWLLLGNLFPLLAGFLLCIWH
              610       620       630       640       650     

>>CCDS46988.1 LMLN gene_id:89782|Hs108|chr3               (692 aa)
 initn: 4582 init1: 2816 opt: 2816  Z-score: 3252.9  bits: 612.3 E(32554): 7.2e-175
Smith-Waterman score: 4464; 94.6% identity (94.6% similar) in 687 aa overlap (1-650:1-687)

               10        20        30        40        50        60
pF1KE0 MVTTLGPKMAAEWGGGVGYSGSGPGRSRWRWSGSVWVRSVLLLLGGLRASATSTPVSLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MVTTLGPKMAAEWGGGVGYSGSGPGRSRWRWSGSVWVRSVLLLLGGLRASATSTPVSLGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SPPCRHHVPSDTEVINKVHLKANHVVKRDVDEHLRIKTVYDKSVEELLPEKKNLVKNKLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SPPCRHHVPSDTEVINKVHLKANHVVKRDVDEHLRIKTVYDKSVEELLPEKKNLVKNKLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PQAISYLEKTFQVRRPAGTILLSRQCATNQYLRKENDPHRYCTGECAAHTKCGPVIVPEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PQAISYLEKTFQVRRPAGTILLSRQCATNQYLRKENDPHRYCTGECAAHTKCGPVIVPEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 HLQQCRVYRGGKWPHGAVGVPDQEGISDADFVLYVGALATERCSHENIISYAAYCQQEAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HLQQCRVYRGGKWPHGAVGVPDQEGISDADFVLYVGALATERCSHENIISYAAYCQQEAN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MDRPIAGYANLCPNMISTQPQEFVGMLSTVKHEVIHALGFSAGLFAFYHDKDGNPLTSRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MDRPIAGYANLCPNMISTQPQEFVGMLSTVKHEVIHALGFSAGLFAFYHDKDGNPLTSRF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ADGLPPFNYSLGLYQWSDKVVRKVERLWDVRDNKIVRHTVYLLVTPRVVEEARKHFDCPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ADGLPPFNYSLGLYQWSDKVVRKVERLWDVRDNKIVRHTVYLLVTPRVVEEARKHFDCPV
              310       320       330       340       350       360

              370       380       390       400       410          
pF1KE0 LEGMELENQGGVGTELNHWEKRLLENEAMTGSHTQNRVLSRITLALMEDTG---------
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
CCDS46 LEGMELENQGGVGTELNHWEKRLLENEAMTGSHTQNRVLSRITLALMEDTGWYKANYSMA
              370       380       390       400       410       420

                                         420       430       440   
pF1KE0 ----------------------------RQMLSPYCDTLRSNPLQLTCRQDQRAVAVCNL
                                   ::::::::::::::::::::::::::::::::
CCDS46 EKLDWGRGMGCDFVRKSCKFWIDQQRQKRQMLSPYCDTLRSNPLQLTCRQDQRAVAVCNL
              430       440       450       460       470       480

           450       460       470       480       490       500   
pF1KE0 QKFPKPLPQEYQYFDELSGIPAEDLPYYGGSVEIADYCPFSQEFSWHLSGEYQRSSDCRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QKFPKPLPQEYQYFDELSGIPAEDLPYYGGSVEIADYCPFSQEFSWHLSGEYQRSSDCRI
              490       500       510       520       530       540

           510       520       530       540       550       560   
pF1KE0 LENQPEIFKNYGAEKYGPHSVCLIQKSAFVMEKCERKLSYPDWGSGCYQVSCSPQGLKVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LENQPEIFKNYGAEKYGPHSVCLIQKSAFVMEKCERKLSYPDWGSGCYQVSCSPQGLKVW
              550       560       570       580       590       600

           570       580       590       600       610       620   
pF1KE0 VQDTSYLCSRAGQVLPVSIQMNGWIHDGNLLCPSCWDFCELCPPETDPPATNLTRALPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VQDTSYLCSRAGQVLPVSIQMNGWIHDGNLLCPSCWDFCELCPPETDPPATNLTRALPLD
              610       620       630       640       650       660

           630       640       650     
pF1KE0 LCSCSSSLVVTLWLLLGNLFPLLAGFLLCIWH
       :::::::::::::::::::::::::::     
CCDS46 LCSCSSSLVVTLWLLLGNLFPLLAGFLLCIWH
              670       680       690  




655 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:45:00 2016 done: Thu Nov  3 13:45:01 2016
 Total Scan time:  3.690 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]