FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0344, 707 aa
  1>>>pF1KE0344 707 - 707 aa - 707 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1932+/-0.000783; mu= 21.2242+/- 0.047
 mean_var=75.7541+/-15.202, 0's: 0 Z-trim(108.9): 10  B-trim: 0 in 0/49
 Lambda= 0.147357
 statistics sampled from 10534 (10539) to 10534 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.324), width:  16
 Scan time:  3.990

The best scores are:                                      opt bits E(32554)
CCDS14093.2 LMF2 gene_id:91289|Hs108|chr22         ( 707) 4832 1036.9       0
CCDS45373.1 LMF1 gene_id:64788|Hs108|chr16         ( 567)  407 96.1 1.6e-19


>>CCDS14093.2 LMF2 gene_id:91289|Hs108|chr22              (707 aa)
 initn: 4832 init1: 4832 opt: 4832  Z-score: 5546.9  bits: 1036.9 E(32554):    0
Smith-Waterman score: 4832; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707)

               10        20        30        40        50        60
pF1KE0 MAGSRLPRQLFLQGVAAVFMFAFASLYTQIPGLYGPEGILPARRTLRPQGKGRWQQLWET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAGSRLPRQLFLQGVAAVFMFAFASLYTQIPGLYGPEGILPARRTLRPQGKGRWQQLWET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PTLLWEAPRLGLDTAQGLELLSLLGALVALGALLLSPLRHPVIYLLLWAAYLSACQVGQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PTLLWEAPRLGLDTAQGLELLSLLGALVALGALLLSPLRHPVIYLLLWAAYLSACQVGQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FLYFQWDSLLLETGFLAVLVAPLRPASHRKEAPQGRQAGALPHEDLPFWLVRWLLFRLMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FLYFQWDSLLLETGFLAVLVAPLRPASHRKEAPQGRQAGALPHEDLPFWLVRWLLFRLMF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ASGVVKLTSRCPAWWGLTALTYHYETQCLPTPAAWFAHHLPVWLHKLSVVATFLIEIAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASGVVKLTSRCPAWWGLTALTYHYETQCLPTPAAWFAHHLPVWLHKLSVVATFLIEIAVP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PLFFAPIRRLRLAAFYSQVLLQVLIIITGNYNFFNLMTLVLTTALLDDQHLAAEPGHGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PLFFAPIRRLRLAAFYSQVLLQVLIIITGNYNFFNLMTLVLTTALLDDQHLAAEPGHGSR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KKTATSWPKALLATLSLLLELAVYGLLAYGTVHYFGLEVDWQQRTIHSRTTFTFHQFSQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKTATSWPKALLATLSLLLELAVYGLLAYGTVHYFGLEVDWQQRTIHSRTTFTFHQFSQW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 LKTLTLPTVWLGVASLVWELLSALWRWTQVRGWLRKLSAVVQLSLVGTATVALFLISLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LKTLTLPTVWLGVASLVWELLSALWRWTQVRGWLRKLSAVVQLSLVGTATVALFLISLVP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YSYVEPGTHGRLWTGAHRLFGAVEHLQLANSYGLFRRMTGLGGRPEVVLEGSYDGHHWTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YSYVEPGTHGRLWTGAHRLFGAVEHLQLANSYGLFRRMTGLGGRPEVVLEGSYDGHHWTE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 IEFMYKPGNLSRPPPVVVPHQPRLDWQMWFAALGPHTHSPWFTSLVLRLLQGKEPVIRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IEFMYKPGNLSRPPPVVVPHQPRLDWQMWFAALGPHTHSPWFTSLVLRLLQGKEPVIRLV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 QSQVARYPFHKQPPTYVRAQRYKYWFSQPGEQGQWWRRQWVEEFFPSVSLGDPTLETLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QSQVARYPFHKQPPTYVRAQRYKYWFSQPGEQGQWWRRQWVEEFFPSVSLGDPTLETLLR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 QFGLQEKSPPRTRSANSTLAQALHWTRSQLSPLEAPALLWGLLMAVGAVRFVQALLAPCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QFGLQEKSPPRTRSANSTLAQALHWTRSQLSPLEAPALLWGLLMAVGAVRFVQALLAPCS
              610       620       630       640       650       660

              670       680       690       700       
pF1KE0 LRSSPLAPVSGEKRRPASQKDSGAASEQATAAPNPCSSSSRTTRRKK
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LRSSPLAPVSGEKRRPASQKDSGAASEQATAAPNPCSSSSRTTRRKK
              670       680       690       700       

>>CCDS45373.1 LMF1 gene_id:64788|Hs108|chr16              (567 aa)
 initn: 596 init1: 177 opt: 407  Z-score: 464.2  bits: 96.1 E(32554): 1.6e-19
Smith-Waterman score: 792; 30.0% identity (54.9% similar) in 621 aa overlap (6-609:51-566)

                                        10        20        30     
pF1KE0                          MAGSRLPRQLFLQGVAAVFMFAFASLYTQIPGLYG
                                     : : ..:...: :.. ::   . :   : :
CCDS45 GYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRIVLLKALAFVYFVAFLVAFHQNKQLIG
               30        40        50        60        70        80

          40             50        60        70        80        90
pF1KE0 PEGILPARRTLRP-----QGKGRWQQLWETPTLLWEAPRLGLDTAQGLELLSLLGALVAL
        .:.:: :  :.      : .  :. .   ::.::       :  ..:.::.:::  .. 
CCDS45 DRGLLPCRVFLKNFQQYFQDRTSWEVFSYMPTILWLMDWS--DMNSNLDLLALLGLGIS-
               90       100       110       120         130        

              100       110       120       130       140       150
pF1KE0 GALLLSPLRHPVIYLLLWAAYLSACQVGQVFLYFQWDSLLLETGFLAVLVAPLRPASHRK
       . .:..   . ...  ::. :.:  .::.:.  : :.: :::::::.... ::   :   
CCDS45 SFVLITGCANMLLMAALWGLYMSLVNVGHVWYSFGWESQLLETGFLGIFLCPLWTLS---
       140       150       160       170       180       190       

              160       170       180        190       200         
pF1KE0 EAPQGRQAGALPHEDLPFWLVRWLLFRLMFASGVVKLTS-RCPAWWGLTALTYHYETQCL
       . ::       :   . .:  :::.::.:...:..:. . ::  :  :: . .::::: .
CCDS45 RLPQHT-----PTSRIVLWGFRWLIFRIMLGAGLIKIRGDRC--WRDLTCMDFHYETQPM
          200            210       220       230         240       

     210       220       230       240       250       260         
pF1KE0 PTPAAWFAHHLPVWLHKLSVVATFLIEIAVPPLFFAPIRRLRLAAFYSQVLLQVLIIITG
       :.:.:.. :: : :.:.. .... .::. :: ..:   ::  .     :.:.:...:..:
CCDS45 PNPVAYYLHHSPWWFHRFETLSNHFIELLVPFFLFLG-RRACIIHGVLQILFQAVLIVSG
       250       260       270       280        290       300      

     270       280       290       300       310       320         
pF1KE0 NYNFFNLMTLVLTTALLDDQHLAAEPGHGSRKKTATSWPKALLATLSLLLELAVYGLLAY
       : .:.: .:.: . : .::                        :::..:.        . 
CCDS45 NLSFLNWLTMVPSLACFDD------------------------ATLGFLFP------SGP
        310       320                               330            

     330       340       350       360       370       380         
pF1KE0 GTVHYFGLEVDWQQRTIHSRTTFTFHQFSQWLKTLTLPTVWLGVASLVWELLSALWRWTQ
       :...   :..   :: :  : .    .:.. ..  .  .: :::  :.:           
CCDS45 GSLKDRVLQM---QRDI--RGARPEPRFGSVVRRAA--NVSLGVL-LAW-----------
        340          350         360         370                   

     390       400       410       420       430       440         
pF1KE0 VRGWLRKLSAVVQLSLVGTATVALFLISLVPYSYVEPGTHGRLWTGAHRLFGAVEHLQLA
              ::. : :.:...  :               .::          :..   :...
CCDS45 -------LSVPVVLNLLSSRQVM--------------NTH----------FNS---LHIV
              380       390                                  400   

     450       460       470             480       490       500   
pF1KE0 NSYGLFRRMTGLGGRPEVVLEGSYDGH------HWTEIEFMYKPGNLSRPPPVVVPHQPR
       :.:: :  .:    : ::.:.:. ...       : . ::  :::. :: : .. :.. :
CCDS45 NTYGAFGSITK--ERAEVILQGTASSNASAPDAMWEDYEFKCKPGDPSRRPCLISPYHYR
           410         420       430       440       450       460 

           510       520       530       540       550        560  
pF1KE0 LDWQMWFAALGPHTHSPWFTSLVLRLLQGKEPVIRLVQSQVARYPFH-KQPPTYVRAQRY
       ::: :::::.  . :. :.  :. .:: .   .. :.    :. ::  . :: .::...:
CCDS45 LDWLMWFAAFQTYEHNDWIIHLAGKLLASDAEALSLL----AHNPFAGRPPPRWVRGEHY
             470       480       490           500       510       

            570           580       590       600       610        
pF1KE0 KYWFSQPG----EQGQWWRRQWVEEFFPSVSLGDPTLETLLRQFGLQEKSPPRTRSANST
       .: ::.::     .:.:: :. .  .:: .:: .  :.  .:. :    .:         
CCDS45 RYKFSRPGGRHAAEGKWWVRKRIGAYFPPLSLEE--LRPYFRDRGWPLPGPL        
       520       530       540       550         560               

      620       630       640       650       660       670        
pF1KE0 LAQALHWTRSQLSPLEAPALLWGLLMAVGAVRFVQALLAPCSLRSSPLAPVSGEKRRPAS




707 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:09:26 2016 done: Sat Nov  5 22:09:27 2016
 Total Scan time:  3.990 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]