Result of FASTA (ccds) for
pF1KE0308
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0308, 519 aa
1>>>pF1KE0308 519 - 519 aa - 519 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0411+/-0.000772; mu= 15.9134+/- 0.046
mean_var=96.6652+/-18.884, 0's: 0 Z-trim(110.2): 12 B-trim: 0 in 0/51
Lambda= 0.130448
statistics sampled from 11451 (11458) to 11451 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.352), width: 16
Scan time: 3.130
The best scores are: opt bits E(32554)
CCDS3798.1 FAM198B gene_id:51313|Hs108|chr4 ( 519) 3548 678.0 7e-195
CCDS34087.1 FAM198B gene_id:51313|Hs108|chr4 ( 527) 3330 637.0 1.6e-182
CCDS46808.1 FAM198A gene_id:729085|Hs108|chr3 ( 575) 804 161.6 2.2e-39
>>CCDS3798.1 FAM198B gene_id:51313|Hs108|chr4 (519 aa)
initn: 3548 init1: 3548 opt: 3548 Z-score: 3612.2 bits: 678.0 E(32554): 7e-195
Smith-Waterman score: 3548; 100.0% identity (100.0% similar) in 519 aa overlap (1-519:1-519)
10 20 30 40 50 60
pF1KE0 MTCPDKPGQLINWFICSLCVPRVRKLWSSRRPRTRRNLLLGTACAIYLGFLVSQVGRASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MTCPDKPGQLINWFICSLCVPRVRKLWSSRRPRTRRNLLLGTACAIYLGFLVSQVGRASL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QHGQAAEKGPHRSRDTAEPSFPEIPLDGTLAPPESQGNGSTLQPNVVYITLRSKRSKPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 QHGQAAEKGPHRSRDTAEPSFPEIPLDGTLAPPESQGNGSTLQPNVVYITLRSKRSKPAN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IRGTVKPKRRKKHAVASAAPGQEALVGPSLQPQEAAREADAVAPGYAQGANLVKIGERPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 IRGTVKPKRRKKHAVASAAPGQEALVGPSLQPQEAAREADAVAPGYAQGANLVKIGERPW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RLVRGPGVRAGGPDFLQPSSRESNIRIYSESAPSWLSKDDIRRMRLLADSAVAGLRPVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 RLVRGPGVRAGGPDFLQPSSRESNIRIYSESAPSWLSKDDIRRMRLLADSAVAGLRPVSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 RSGARLLVLEGGAPGAVLRCGPSPCGLLKQPLDMSEVFAFHLDRILGLNRTLPSVSRKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 RSGARLLVLEGGAPGAVLRCGPSPCGLLKQPLDMSEVFAFHLDRILGLNRTLPSVSRKAE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 FIQDGRPCPIILWDASLSSASNDTHSSVKLTWGTYQQLLKQKCWQNGRVPKPESGCTEIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 FIQDGRPCPIILWDASLSSASNDTHSSVKLTWGTYQQLLKQKCWQNGRVPKPESGCTEIH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 HHEWSKMALFDFLLQIYNRLDTNCCGFRPRKEDACVQNGLRPKCDDQGSAALAHIIQRKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 HHEWSKMALFDFLLQIYNRLDTNCCGFRPRKEDACVQNGLRPKCDDQGSAALAHIIQRKH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 DPRHLVFIDNKGFFDRSEDNLNFKLLEGIKEFPASAVSVLKSQHLRQKLLQSLFLDKVYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 DPRHLVFIDNKGFFDRSEDNLNFKLLEGIKEFPASAVSVLKSQHLRQKLLQSLFLDKVYW
430 440 450 460 470 480
490 500 510
pF1KE0 ESQGGRQGIEKLIDVIEHRAKILITYINAHGVKVLPMNE
:::::::::::::::::::::::::::::::::::::::
CCDS37 ESQGGRQGIEKLIDVIEHRAKILITYINAHGVKVLPMNE
490 500 510
>>CCDS34087.1 FAM198B gene_id:51313|Hs108|chr4 (527 aa)
initn: 3357 init1: 2045 opt: 3330 Z-score: 3390.4 bits: 637.0 E(32554): 1.6e-182
Smith-Waterman score: 3331; 93.8% identity (95.1% similar) in 529 aa overlap (1-519:1-527)
10 20 30 40 50 60
pF1KE0 MTCPDKPGQLINWFICSLCVPRVRKLWSSRRPRTRRNLLLGTACAIYLGFLVSQVGRASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MTCPDKPGQLINWFICSLCVPRVRKLWSSRRPRTRRNLLLGTACAIYLGFLVSQVGRASL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QHGQAAEKGPHRSRDTAEPSFPEIPLDGTLAPPESQGNGSTLQPNVVYITLRSKRSKPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QHGQAAEKGPHRSRDTAEPSFPEIPLDGTLAPPESQGNGSTLQPNVVYITLRSKRSKPAN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IRGTVKPKRRKKHAVASAAPGQEALVGPSLQPQEAAREADAVAPGYAQGANLVKIGERPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IRGTVKPKRRKKHAVASAAPGQEALVGPSLQPQEAAREADAVAPGYAQGANLVKIGERPW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RLVRGPGVRAGGPDFLQPSSRESNIRIYSESAPSWLSKDDIRRMRLLADSAVAGLRPVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RLVRGPGVRAGGPDFLQPSSRESNIRIYSESAPSWLSKDDIRRMRLLADSAVAGLRPVSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 RSGARLLVLEGGAPGAVLRCGPSPCGLLKQPLDMSEVFAFHLDRILGLNRTLPSVSRKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RSGARLLVLEGGAPGAVLRCGPSPCGLLKQPLDMSEVFAFHLDRILGLNRTLPSVSRKAE
250 260 270 280 290 300
310 320 330 340 350
pF1KE0 FIQDGRPCPIIL---------W-DASLSSASNDTHSSVKLTWGTYQQLLKQKCWQNGRVP
::: . . . : : . . :. .:::::::::::::::::::::
CCDS34 FIQAAAAACLSMRLAFFIFPAWEDMRVPGKCCIGHA--RLTWGTYQQLLKQKCWQNGRVP
310 320 330 340 350
360 370 380 390 400 410
pF1KE0 KPESGCTEIHHHEWSKMALFDFLLQIYNRLDTNCCGFRPRKEDACVQNGLRPKCDDQGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KPESGCTEIHHHEWSKMALFDFLLQIYNRLDTNCCGFRPRKEDACVQNGLRPKCDDQGSA
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE0 ALAHIIQRKHDPRHLVFIDNKGFFDRSEDNLNFKLLEGIKEFPASAVSVLKSQHLRQKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ALAHIIQRKHDPRHLVFIDNKGFFDRSEDNLNFKLLEGIKEFPASAVSVLKSQHLRQKLL
420 430 440 450 460 470
480 490 500 510
pF1KE0 QSLFLDKVYWESQGGRQGIEKLIDVIEHRAKILITYINAHGVKVLPMNE
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QSLFLDKVYWESQGGRQGIEKLIDVIEHRAKILITYINAHGVKVLPMNE
480 490 500 510 520
>>CCDS46808.1 FAM198A gene_id:729085|Hs108|chr3 (575 aa)
initn: 806 init1: 575 opt: 804 Z-score: 820.7 bits: 161.6 E(32554): 2.2e-39
Smith-Waterman score: 857; 33.1% identity (57.7% similar) in 553 aa overlap (4-515:42-570)
10 20 30
pF1KE0 MTCPDKPGQLINWFICSLCVPRVRK-LWSSRRP
:: :: . . . . ..:. : ::::
CCDS46 KRRPVIAFCLLMILSAMAVTRFPPQRPSAGPD-PGPMEPQGVTGAPATHIRQALSSSRRQ
20 30 40 50 60 70
40 50 60 70 80
pF1KE0 RTR-----------RNLLLGTACAIYLGFLVSQVGRASLQHGQAAEKGPHR-SRDTAEPS
:.: :: .: .:: : ..: :. . : . . : : :: . .
CCDS46 RARNMGFWRSRALPRNSIL--VCAEEQGHR-ARVDRSRESPG-GDLRHPGRVRRDITLSG
80 90 100 110 120
90 100 110 120 130
pF1KE0 FPEIPLDGTLAPPESQGNGSTLQPNVVYITLRSK-RSKPANIRGTVKPKRRKKHAVASAA
:.. . .. :.. :. .. . : . ... :.: . : :
CCDS46 HPRLSTQHVVLLREDE-VGDPGTKDLGHPQHGSPIQETQSEVVTLVSPLPGSDMA---AL
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE0 PGQEALVGPSLQPQEA------AREADAVAPGYAQGANLVKIGERPWRLVRGPGV--RAG
:. .: : .: :. : . : :.. : . : . : :: .
CCDS46 PAWRATSGLTLWPHTAEGRDLLGAENRALTGGQQAEDPTLASGAHQW-----PGSVEKLQ
190 200 210 220 230
200 210 220 230 240 250
pF1KE0 GPDFLQPSSRESNIRIYSESAPSWLSKDDIRRMRLLADSAVAGLRPVSSRSGARLLVLEG
: . . . :. : .. :: ::. :.. .::::.. :. ..: :. ::.
CCDS46 GSVWCDAETLLSSSRTGGQ-APPWLTDHDVQMLRLLAQGEVVD----KARVPAHGQVLQV
240 250 260 270 280 290
260 270 280 290 300
pF1KE0 G-----------APGAVLRCGPSPCGLLKQPLDMSEVFAFHLDRILGLNRTLPSVSRKAE
: .: :. . :::.:.: :. ::..::.::.::: :.::.:.:. .
CCDS46 GFSTEAALQDLSSPRLSQLCSQGLCGLIKRPGDLPEVLSFHVDRVLGLRRSLPAVARRFH
300 310 320 330 340 350
310 320 330 340 350
pF1KE0 F------IQDGRPCPIILW--DASLSSASNDTHSSVKLTWGTYQQLLKQKCWQNGRVPKP
:: :.: : :.. : .. ..:. : : :: :: ..: :..:
CCDS46 SPLLPYRYTDGGARPVIWWAPDVQHLSDPDEDQNSLALGWLQYQALLAHSCNWPGQAP--
360 370 380 390 400 410
360 370 380 390 400 410
pF1KE0 ESGCTEIHHHEWSKMALFDFLLQIYNRLDTNCCGFRPRKEDACVQNGLRPKCDDQGSAAL
: ::: ::...::::::::...::: ::::.:. : ::.. :: ::.. . :
CCDS46 ---CPGIHHTEWARLALFDFLLQVHDRLDRYCCGFEPEPSDPCVEERLREKCQNPAELRL
420 430 440 450 460
420 430 440 450 460 470
pF1KE0 AHIIQRKHDPRHLVFIDNKGFFDRSEDNLNFKLLEGIKEFPASAVSVLKSQHLRQKLLQS
.::. :. :: :::.::: : ... ::.:::.::::: :: :::.:: : :.. ::.:
CCDS46 VHILVRSSDPSHLVYIDNAGNLQHPEDKLNFRLLEGIDGFPESAVKVLASGCLQNMLLKS
470 480 490 500 510 520
480 490 500 510
pF1KE0 LFLDKVYWESQGGRQGIEKLIDVIEHRAKILITYINAHGVKVLPMNE
: .: :.:::::: ::........:.:...:. .:. :.. ..
CCDS46 LQMDPVFWESQGGAQGLKQVLQTLEQRGQVLLGHIQKHNLTLFRDEDP
530 540 550 560 570
519 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:24:47 2016 done: Thu Nov 3 16:24:47 2016
Total Scan time: 3.130 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]