FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0284, 337 aa
  1>>>pF1KE0284 337 - 337 aa - 337 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9564+/-0.000728; mu= 14.2207+/- 0.044
 mean_var=94.8082+/-19.035, 0's: 0 Z-trim(112.0): 7  B-trim: 3 in 1/50
 Lambda= 0.131720
 statistics sampled from 12861 (12867) to 12861 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.395), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS30696.1 ERI3 gene_id:79033|Hs108|chr1          ( 337) 2391 464.0 7.5e-131
CCDS5972.1 ERI1 gene_id:90459|Hs108|chr8           ( 349)  467 98.4   9e-21


>>CCDS30696.1 ERI3 gene_id:79033|Hs108|chr1               (337 aa)
 initn: 2391 init1: 2391 opt: 2391  Z-score: 2462.6  bits: 464.0 E(32554): 7.5e-131
Smith-Waterman score: 2391; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)

               10        20        30        40        50        60
pF1KE0 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL
              250       260       270       280       290       300

              310       320       330       
pF1KE0 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
       :::::::::::::::::::::::::::::::::::::
CCDS30 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
              310       320       330       

>>CCDS5972.1 ERI1 gene_id:90459|Hs108|chr8                (349 aa)
 initn: 365 init1: 246 opt: 467  Z-score: 486.4  bits: 98.4 E(32554): 9e-21
Smith-Waterman score: 467; 40.7% identity (64.9% similar) in 194 aa overlap (137-327:121-313)

        110       120       130       140       150         160    
pF1KE0 FSPCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDK--PQIHPQE
                                     .:  . : :. ..::::::..  :    .:
CCDS59 FKLETRGVKDVLKKRLKNYYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHE
              100       110       120       130       140       150

          170       180       190       200       210       220    
pF1KE0 IIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERV
       :::::.. :: .:.:::.::..::.: .. ::. ::  :::: : .::   .. :::..:
CCDS59 IIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKV
              160       170       180       190       200       210

          230       240       250       260       270        280   
pF1KE0 DEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAY-SFAM
        .:: :   :  . :  ..: :.::.. .:  :::   :    . :.:::..:.: .:  
CCDS59 IDWM-KLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYK
               220       230       240       250       260         

           290       300       310       320       330             
pF1KE0 GCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF      
           .. :  : . :.... :::: :.:: :::: :   .   :                
CCDS59 VPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMS
     270       280       290       300       310       320         

CCDS59 VSSSLPIEGTPPPQMPHFRK
     330       340         




337 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:45:20 2016 done: Thu Nov  3 17:45:20 2016
 Total Scan time:  2.840 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]