FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0280, 71 aa
  1>>>pF1KE0280 71 - 71 aa - 71 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.1561+/-0.000208; mu= 13.9912+/- 0.013
 mean_var=53.9591+/-10.608, 0's: 0 Z-trim(125.8): 10  B-trim: 0 in 0/56
 Lambda= 0.174599
 statistics sampled from 50449 (50461) to 50449 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.897), E-opt: 0.2 (0.592), width:  16
 Scan time:  3.500

The best scores are:                                      opt bits E(85289)
NP_697019 (OMIM: 616076) beta-defensin 123 precurs (  67)  150 43.7 2.9e-05
NP_001011878 (OMIM: 616075) beta-defensin 121 isof (  76)  136 40.2 0.00037
NP_695021 (OMIM: 615997) beta-defensin 119 isoform (  84)  127 38.0  0.0019
NP_473453 (OMIM: 607650) beta-defensin 118 precurs ( 123)  125 37.6  0.0036
NP_001165303 (OMIM: 616075) beta-defensin 121 isof (  64)  118 35.6  0.0075
XP_005260440 (OMIM: 616075) PREDICTED: beta-defens (  64)  118 35.6  0.0075


>>NP_697019 (OMIM: 616076) beta-defensin 123 precursor [  (67 aa)
 initn: 196 init1: 110 opt: 150  Z-score: 215.5  bits: 43.7 E(85289): 2.9e-05
Smith-Waterman score: 150; 32.9% identity (62.9% similar) in 70 aa overlap (1-70:1-64)

               10        20        30        40        50        60
pF1KE0 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL
       :  ::: :..::.:...  : ..  :::.  : :.  :...:  .  : . ..::.    
NP_697 MKLLLLTLTVLLLLSQLTPGGTQ--RCWNLYGKCRYRCSKKERVYVYCINNKMCCV----
               10        20          30        40        50        

               70   
pF1KE0 KPPPVPKHEYE  
       ::   ::...   
NP_697 KPKYQPKERWWPF
           60       

>>NP_001011878 (OMIM: 616075) beta-defensin 121 isoform   (76 aa)
 initn: 135 init1: 112 opt: 136  Z-score: 195.7  bits: 40.2 E(85289): 0.00037
Smith-Waterman score: 136; 34.8% identity (60.6% similar) in 66 aa overlap (1-66:1-58)

               10        20        30        40        50        60
pF1KE0 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL
       :  :::.:.. :.:..:    .   .::  .: :.: : ..:.:. ::   . ::..   
NP_001 MKLLLLLLTVTLLLAQV----TPVMKCWGKSGRCRTTCKESEVYYILCKTEAKCCVD---
               10            20        30        40        50      

               70              
pF1KE0 KPPPVPKHEYE             
        :  ::                  
NP_001 -PKYVPVKPKLTDTNTSLESTSAV
             60        70      

>>NP_695021 (OMIM: 615997) beta-defensin 119 isoform a p  (84 aa)
 initn: 135 init1: 102 opt: 127  Z-score: 182.9  bits: 38.0 E(85289): 0.0019
Smith-Waterman score: 127; 31.4% identity (60.0% similar) in 70 aa overlap (1-69:1-70)

               10         20        30        40        50         
pF1KE0 MTQLLLFLVALLVLGH-VPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYA
       :  : :::. ::.. . : ::. .. ::  ..: :.. : ..:  .  : . . :::.  
NP_695 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQSY
               10        20        30        40        50        60

      60        70             
pF1KE0 LKPPPVPKHEYE            
       ..     :.:              
NP_695 MRISISGKEENTDWSYEKQWPRLP
               70        80    

>>NP_473453 (OMIM: 607650) beta-defensin 118 precursor [  (123 aa)
 initn: 125 init1: 125 opt: 125  Z-score: 178.0  bits: 37.6 E(85289): 0.0036
Smith-Waterman score: 125; 33.9% identity (53.6% similar) in 56 aa overlap (1-56:1-56)

               10        20        30        40        50        60
pF1KE0 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL
       :  ::: :  :..: .:  . :  :.::. .: :.  :   :.    : .   ::.    
NP_473 MKLLLLALPMLVLLPQVIPAYSGEKKCWNRSGHCRKQCKDGEAVKDTCKNLRACCIPSNE
               10        20        30        40        50        60

               70                                                  
pF1KE0 KPPPVPKHEYE                                                 
                                                                   
NP_473 DHRRVPATSPTPLSDSTPGIIDDILTVRFTTDYFEVSSKKDMVEESEAGRGTETSLPNVH
               70        80        90       100       110       120

>>NP_001165303 (OMIM: 616075) beta-defensin 121 isoform   (64 aa)
 initn: 126 init1: 109 opt: 118  Z-score: 172.2  bits: 35.6 E(85289): 0.0075
Smith-Waterman score: 118; 36.4% identity (59.1% similar) in 44 aa overlap (23-66:7-46)

               10        20        30        40        50        60
pF1KE0 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL
                             :  .::  .: :.: : ..:.:. ::   . ::..   
NP_001                 MFQEVKEVMKCWGKSGRCRTTCKESEVYYILCKTEAKCCVD---
                               10        20        30        40    

               70              
pF1KE0 KPPPVPKHEYE             
        :  ::                  
NP_001 -PKYVPVKPKLTDTNTSLESTSAV
               50        60    

>>XP_005260440 (OMIM: 616075) PREDICTED: beta-defensin 1  (64 aa)
 initn: 126 init1: 109 opt: 118  Z-score: 172.2  bits: 35.6 E(85289): 0.0075
Smith-Waterman score: 118; 36.4% identity (59.1% similar) in 44 aa overlap (23-66:7-46)

               10        20        30        40        50        60
pF1KE0 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL
                             :  .::  .: :.: : ..:.:. ::   . ::..   
XP_005                 MFQEVKEVMKCWGKSGRCRTTCKESEVYYILCKTEAKCCVD---
                               10        20        30        40    

               70              
pF1KE0 KPPPVPKHEYE             
        :  ::                  
XP_005 -PKYVPVKPKLTDTNTSLESTSAV
               50        60    




71 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:49:50 2016 done: Thu Nov  3 17:49:51 2016
 Total Scan time:  3.500 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]