FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0280, 71 aa
  1>>>pF1KE0280 71 - 71 aa - 71 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 3.9610+/-0.000399; mu= 15.2630+/- 0.024
 mean_var=55.4618+/-10.697, 0's: 0 Z-trim(118.9): 29  B-trim: 71 in 2/50
 Lambda= 0.172218
 statistics sampled from 19968 (19998) to 19968 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.905), E-opt: 0.2 (0.614), width:  16
 Scan time:  1.160

The best scores are:                                      opt bits E(32554)
CCDS33457.1 DEFB124 gene_id:245937|Hs108|chr20     (  71)  517 134.3 6.1e-33


>>CCDS33457.1 DEFB124 gene_id:245937|Hs108|chr20          (71 aa)
 initn: 517 init1: 517 opt: 517  Z-score: 704.8  bits: 134.3 E(32554): 6.1e-33
Smith-Waterman score: 517; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)

               10        20        30        40        50        60
pF1KE0 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL
               10        20        30        40        50        60

               70 
pF1KE0 KPPPVPKHEYE
       :::::::::::
CCDS33 KPPPVPKHEYE
               70 




71 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:49:50 2016 done: Thu Nov  3 17:49:50 2016
 Total Scan time:  1.160 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]