FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0275, 174 aa
  1>>>pF1KE0275 174 - 174 aa - 174 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5240+/-0.000563; mu= 8.4025+/- 0.034
 mean_var=112.7777+/-22.157, 0's: 0 Z-trim(116.8): 5  B-trim: 0 in 0/53
 Lambda= 0.120771
 statistics sampled from 17478 (17480) to 17478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.537), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS42298.1 C17orf50 gene_id:146853|Hs108|chr17    ( 174) 1227 223.1 6.9e-59


>>CCDS42298.1 C17orf50 gene_id:146853|Hs108|chr17         (174 aa)
 initn: 1227 init1: 1227 opt: 1227  Z-score: 1170.6  bits: 223.1 E(32554): 6.9e-59
Smith-Waterman score: 1227; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174)

               10        20        30        40        50        60
pF1KE0 MDKHGVKTPLWKKETEELRAEDAEQEEGKEGSEDEDEDNQRPLEDSATEGEEPPRVAEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDKHGVKTPLWKKETEELRAEDAEQEEGKEGSEDEDEDNQRPLEDSATEGEEPPRVAEEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EGRERRSVSYCPLRQESSTQQVALLRRADSGFWGWLGPLALLGGLTAPTDRKRSLPEEPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EGRERRSVSYCPLRQESSTQQVALLRRADSGFWGWLGPLALLGGLTAPTDRKRSLPEEPC
               70        80        90       100       110       120

              130       140       150       160       170    
pF1KE0 VLEIRRRPPRRGGCACCELLFCKKCRSLHSHPAYVAHCVLDHPDLGKAGAAGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VLEIRRRPPRRGGCACCELLFCKKCRSLHSHPAYVAHCVLDHPDLGKAGAAGNS
              130       140       150       160       170    




174 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:00:14 2016 done: Thu Nov  3 18:00:14 2016
 Total Scan time:  2.080 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]