FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0274, 109 aa
  1>>>pF1KE0274 109 - 109 aa - 109 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2911+/-0.000788; mu= 10.6604+/- 0.048
 mean_var=77.5461+/-15.102, 0's: 0 Z-trim(108.8): 70  B-trim: 0 in 0/51
 Lambda= 0.145645
 statistics sampled from 10382 (10452) to 10382 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.321), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS5653.1 OCM2 gene_id:4951|Hs108|chr7            ( 109)  703 156.3 3.5e-39
CCDS43548.1 OCM gene_id:654231|Hs108|chr7          ( 109)  693 154.2 1.5e-38
CCDS13933.1 PVALB gene_id:5816|Hs108|chr22         ( 110)  361 84.4 1.5e-17


>>CCDS5653.1 OCM2 gene_id:4951|Hs108|chr7                 (109 aa)
 initn: 703 init1: 703 opt: 703  Z-score: 816.9  bits: 156.3 E(32554): 3.5e-39
Smith-Waterman score: 703; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KE0 MSITDVLSADDIAAALQECQDPDTFEPQKFFQTSGLSKMSASQVKDVFRFIDNDQSGYLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSITDVLSADDIAAALQECQDPDTFEPQKFFQTSGLSKMSASQVKDVFRFIDNDQSGYLD
               10        20        30        40        50        60

               70        80        90       100         
pF1KE0 EEELKFFLQKFESGARELTESETKSLMAAADNDGDGKIGAEEFQEMVHS
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EEELKFFLQKFESGARELTESETKSLMAAADNDGDGKIGAEEFQEMVHS
               70        80        90       100         

>>CCDS43548.1 OCM gene_id:654231|Hs108|chr7               (109 aa)
 initn: 693 init1: 693 opt: 693  Z-score: 805.5  bits: 154.2 E(32554): 1.5e-38
Smith-Waterman score: 693; 98.2% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KE0 MSITDVLSADDIAAALQECQDPDTFEPQKFFQTSGLSKMSASQVKDVFRFIDNDQSGYLD
       :::::::::::::::::::.:::::::::::::::::::::.::::::::::::::::::
CCDS43 MSITDVLSADDIAAALQECRDPDTFEPQKFFQTSGLSKMSANQVKDVFRFIDNDQSGYLD
               10        20        30        40        50        60

               70        80        90       100         
pF1KE0 EEELKFFLQKFESGARELTESETKSLMAAADNDGDGKIGAEEFQEMVHS
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EEELKFFLQKFESGARELTESETKSLMAAADNDGDGKIGAEEFQEMVHS
               70        80        90       100         

>>CCDS13933.1 PVALB gene_id:5816|Hs108|chr22              (110 aa)
 initn: 422 init1: 361 opt: 361  Z-score: 428.5  bits: 84.4 E(32554): 1.5e-17
Smith-Waterman score: 361; 51.4% identity (81.3% similar) in 107 aa overlap (1-107:1-107)

               10        20        30        40        50        60
pF1KE0 MSITDVLSADDIAAALQECQDPDTFEPQKFFQTSGLSKMSASQVKDVFRFIDNDQSGYLD
       ::.::.:.:.::  :.   .  :.:. .::::  ::.: ::..:: ::...:.:.::...
CCDS13 MSMTDLLNAEDIKKAVGAFSATDSFDHKKFFQMVGLKKKSADDVKKVFHMLDKDKSGFIE
               10        20        30        40        50        60

               70        80        90       100          
pF1KE0 EEELKFFLQKFESGARELTESETKSLMAAADNDGDGKIGAEEFQEMVHS 
       :.:: :.:. :   ::.:. .::: ::::.:.:::::::..::. .:   
CCDS13 EDELGFILKGFSPDARDLSAKETKMLMAAGDKDGDGKIGVDEFSTLVAES
               70        80        90       100       110




109 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:02:55 2016 done: Thu Nov  3 18:02:55 2016
 Total Scan time:  1.550 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]