Result of FASTA (ccds) for
pF1KE0268
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0268, 220 aa
1>>>pF1KE0268 220 - 220 aa - 220 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1112+/-0.000716; mu= 13.2333+/- 0.044
mean_var=133.5771+/-25.758, 0's: 0 Z-trim(114.9): 75 B-trim: 0 in 0/53
Lambda= 0.110971
statistics sampled from 15336 (15416) to 15336 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.474), width: 16
Scan time: 2.480
The best scores are: opt bits E(32554)
CCDS8170.1 CABP2 gene_id:51475|Hs108|chr11 ( 220) 1500 250.2 7.5e-67
CCDS9205.1 CABP1 gene_id:9478|Hs108|chr12 ( 227) 893 153.1 1.4e-37
CCDS31913.1 CABP1 gene_id:9478|Hs108|chr12 ( 370) 827 142.7 2.9e-34
CCDS9204.1 CABP1 gene_id:9478|Hs108|chr12 ( 167) 794 137.1 6.6e-33
CCDS12709.1 CABP5 gene_id:56344|Hs108|chr19 ( 173) 767 132.8 1.3e-31
CCDS8166.1 CABP4 gene_id:57010|Hs108|chr11 ( 275) 722 125.8 2.7e-29
CCDS73333.1 CABP4 gene_id:57010|Hs108|chr11 ( 170) 703 122.5 1.6e-28
CCDS1832.1 CALM2 gene_id:805|Hs108|chr2 ( 149) 403 74.4 4.2e-14
CCDS33061.1 CALM3 gene_id:808|Hs108|chr19 ( 149) 403 74.4 4.2e-14
CCDS9892.1 CALM1 gene_id:801|Hs108|chr14 ( 149) 403 74.4 4.2e-14
CCDS7069.1 CALML3 gene_id:810|Hs108|chr10 ( 149) 391 72.5 1.6e-13
>>CCDS8170.1 CABP2 gene_id:51475|Hs108|chr11 (220 aa)
initn: 1500 init1: 1500 opt: 1500 Z-score: 1313.7 bits: 250.2 E(32554): 7.5e-67
Smith-Waterman score: 1500; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE0 MGNCAKRPWRRGPKDPLQWLGSPPRGSCPSPSSSPKEQGDPAPGVQGYSVLNSLVGPACI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MGNCAKRPWRRGPKDPLQWLGSPPRGSCPSPSSSPKEQGDPAPGVQGYSVLNSLVGPACI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCRELGACMRTLGYMPTEMELI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCRELGACMRTLGYMPTEMELI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EISQQISGGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGRISVGELRAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EISQQISGGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGRISVGELRAA
130 140 150 160 170 180
190 200 210 220
pF1KE0 LKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
::::::::::::::::::::::::::::::::::::::::
CCDS81 LKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
190 200 210 220
>>CCDS9205.1 CABP1 gene_id:9478|Hs108|chr12 (227 aa)
initn: 585 init1: 493 opt: 893 Z-score: 788.3 bits: 153.1 E(32554): 1.4e-37
Smith-Waterman score: 893; 61.7% identity (80.6% similar) in 227 aa overlap (1-220:1-227)
10 20 30 40 50
pF1KE0 MGNCAKRPWRRGPKDPLQWLGSPPRGSCPSPSSSPKEQGDPAPGV---QGYSVLNSLVGP
::::.: : : . : . : . . :.: . :. .:...:.::
CCDS92 MGNCVKYPLRNLSRKMCQEEQTSYMVVQTSEEGLAADAELPGPLLMLAQNCAVMHNLLGP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 ACIFLRPSIAAT-QLDRELRPEEIEELQVAFQEFDRDRDGYIGCRELGACMRTLGYMPTE
:::::: ..: . : :: :::::::::. ::.:::.:.::::.::.:: ::::.::::::
CCDS92 ACIFLRKGFAENRQPDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 MELIEISQQIS---GGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGRIS
:::::.::::. ::.:::.::::::::::::::::::::.:::::::::::::::.::
CCDS92 MELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEIS
130 140 150 160 170 180
180 190 200 210 220
pF1KE0 VGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
..::: :.. :::.....:...::..:::::::: ::::::::::::
CCDS92 TSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR
190 200 210 220
>>CCDS31913.1 CABP1 gene_id:9478|Hs108|chr12 (370 aa)
initn: 519 init1: 493 opt: 827 Z-score: 728.7 bits: 142.7 E(32554): 2.9e-34
Smith-Waterman score: 827; 59.8% identity (77.7% similar) in 224 aa overlap (5-220:153-370)
10 20 30
pF1KE0 MGNCAKRPWRRGPKDPLQWLGSPPRGSCPS----
:.:: .: : . . :: :.
CCDS31 RPAPREEGARGSQRVLPQAHCRPREALPAAASRPSPSSPLPPARGRDGEERGLSPALGLR
130 140 150 160 170 180
40 50 60 70 80
pF1KE0 PSSSPKEQGDPAPGVQGYSVLNSLVGPACIFLRPSIA-ATQLDRELRPEEIEELQVAFQE
: . .:: .:.. : . : ::: .. : :: :::::::::. ::.:
CCDS31 GSLRARGRGDSVPAA------ASEADPFLHRLRPMLSSAFGQDRSLRPEEIEELREAFRE
190 200 210 220 230
90 100 110 120 130 140
pF1KE0 FDRDRDGYIGCRELGACMRTLGYMPTEMELIEISQQIS---GGKVDFEDFVELMGPKLLA
::.:.::::.::.:: ::::.:::::::::::.::::. ::.:::.::::::::::::
CCDS31 FDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLA
240 250 260 270 280 290
150 160 170 180 190 200
pF1KE0 ETADMIGVRELRDAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGD
::::::::.:::::::::::::::.::..::: :.. :::.....:...::..:::::::
CCDS31 ETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGD
300 310 320 330 340 350
210 220
pF1KE0 GLVDFEEFVRMMSR
: ::::::::::::
CCDS31 GRVDFEEFVRMMSR
360 370
>>CCDS9204.1 CABP1 gene_id:9478|Hs108|chr12 (167 aa)
initn: 534 init1: 493 opt: 794 Z-score: 704.3 bits: 137.1 E(32554): 6.6e-33
Smith-Waterman score: 794; 71.5% identity (89.7% similar) in 165 aa overlap (59-220:4-167)
30 40 50 60 70 80
pF1KE0 PSPSSSPKEQGDPAPGVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQ
:. : .. :: :::::::::. ::.
CCDS92 MGNCV-KYPLRNLSRKDRSLRPEEIEELREAFR
10 20 30
90 100 110 120 130 140
pF1KE0 EFDRDRDGYIGCRELGACMRTLGYMPTEMELIEISQQIS---GGKVDFEDFVELMGPKLL
:::.:.::::.::.:: ::::.:::::::::::.::::. ::.:::.:::::::::::
CCDS92 EFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 AETADMIGVRELRDAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNG
:::::::::.:::::::::::::::.::..::: :.. :::.....:...::..::::::
CCDS92 AETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNG
100 110 120 130 140 150
210 220
pF1KE0 DGLVDFEEFVRMMSR
:: ::::::::::::
CCDS92 DGRVDFEEFVRMMSR
160
>>CCDS12709.1 CABP5 gene_id:56344|Hs108|chr19 (173 aa)
initn: 770 init1: 454 opt: 767 Z-score: 680.8 bits: 132.8 E(32554): 1.3e-31
Smith-Waterman score: 767; 66.9% identity (87.0% similar) in 169 aa overlap (55-220:5-173)
30 40 50 60 70 80
pF1KE0 RGSCPSPSSSPKEQGDPAPGVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQ
.:::::::: .:: : .: : .:::::.
CCDS12 MQFPMGPACIFLRKGIAEKQRERPLGQDEIEELR
10 20 30
90 100 110 120 130 140
pF1KE0 VAFQEFDRDRDGYIGCRELGACMRTLGYMPTEMELIEISQQIS---GGKVDFEDFVELMG
:: :::.::::.:.:..:: :::.:::::::::::..::: ::.:::.::::::
CCDS12 EAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFDDFVELMT
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 PKLLAETADMIGVRELRDAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDV
:::::::: ::::.:.::::.::::::::.:.. ::. :.. ::::::. ::..:.....
CCDS12 PKLLAETAGMIGVQEMRDAFKEFDTNGDGEITLVELQQAMQRLLGERLTPREISEVVREA
100 110 120 130 140 150
210 220
pF1KE0 DLNGDGLVDFEEFVRMMSR
:.:::: :::::::.::::
CCDS12 DVNGDGTVDFEEFVKMMSR
160 170
>>CCDS8166.1 CABP4 gene_id:57010|Hs108|chr11 (275 aa)
initn: 743 init1: 422 opt: 722 Z-score: 639.4 bits: 125.8 E(32554): 2.7e-29
Smith-Waterman score: 722; 57.0% identity (76.2% similar) in 214 aa overlap (12-220:63-274)
10 20 30 40
pF1KE0 MGNCAKRPWRRGPKDPLQWLGSPPRGSCPSPSSSPKEQGDP
::. : . ..:: .. .:...: . :
CCDS81 EEPPLTRKRSKKERGLRGSRKRTGSSGEQTGPEAPGS-SNNPP-STGEGPAGAPPASPGP
40 50 60 70 80 90
50 60 70 80 90
pF1KE0 APGVQGYSVL-NSLVGPACIFLRPSIAAT-QLDRELRPEEIEELQVAFQEFDRDRDGYIG
: . :.. .:: : : . . :::: :::..:::.::.::: ::::::.
CCDS81 ASSRQSHRHRPDSLHDAAQRTYGPLLNRVFGKDRELGPEELDELQAAFEEFDTDRDGYIS
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE0 CRELGACMRTLGYMPTEMELIEISQQIS---GGKVDFEDFVELMGPKLLAETADMIGVRE
:::: ::::::::::::::.:.::.:. ::.::::.::::.:::: ::: :.::::
CCDS81 HRELGDCMRTLGYMPTEMELLEVSQHIKMRMGGRVDFEEFVELIGPKLREETAHMLGVRE
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE0 LRDAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVR
:: :::::: . ::::.:.::: :. ::::: :. :.::.:..::::::: :::.:::
CCDS81 LRIAFREFDRDRDGRITVAELREAVPALLGEPLAGPELDEMLREVDLNGDGTVDFDEFVM
220 230 240 250 260 270
220
pF1KE0 MMSR
:.::
CCDS81 MLSRH
>>CCDS73333.1 CABP4 gene_id:57010|Hs108|chr11 (170 aa)
initn: 705 init1: 422 opt: 703 Z-score: 625.5 bits: 122.5 E(32554): 1.6e-28
Smith-Waterman score: 703; 71.1% identity (86.8% similar) in 152 aa overlap (72-220:18-169)
50 60 70 80 90 100
pF1KE0 APGVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCR
:::: :::..:::.::.::: ::::::. :
CCDS73 MTEPWLALGTSWTLPLQDRELGPEELDELQAAFEEFDTDRDGYISHR
10 20 30 40
110 120 130 140 150
pF1KE0 ELGACMRTLGYMPTEMELIEISQQIS---GGKVDFEDFVELMGPKLLAETADMIGVRELR
::: ::::::::::::::.:.::.:. ::.::::.::::.:::: ::: :.::::::
CCDS73 ELGDCMRTLGYMPTEMELLEVSQHIKMRMGGRVDFEEFVELIGPKLREETAHMLGVRELR
50 60 70 80 90 100
160 170 180 190 200 210
pF1KE0 DAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMM
:::::: . ::::.:.::: :. ::::: :. :.::.:..::::::: :::.::: :.
CCDS73 IAFREFDRDRDGRITVAELREAVPALLGEPLAGPELDEMLREVDLNGDGTVDFDEFVMML
110 120 130 140 150 160
220
pF1KE0 SR
::
CCDS73 SRH
170
>>CCDS1832.1 CALM2 gene_id:805|Hs108|chr2 (149 aa)
initn: 374 init1: 148 opt: 403 Z-score: 366.6 bits: 74.4 E(32554): 4.2e-14
Smith-Waterman score: 403; 43.0% identity (74.5% similar) in 149 aa overlap (74-219:4-147)
50 60 70 80 90 100
pF1KE0 GVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCREL
.: :.: :.. ::. ::.: :: : .::
CCDS18 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKEL
10 20 30
110 120 130 140 150 160
pF1KE0 GACMRTLGYMPTEMELIEISQQISG---GKVDFEDFVELMGPKLLAETADMIGVRELRDA
:. ::.:: ::: :: .. ..... : .:: .:. .:. :. : . .:.:.:
CCDS18 GTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM----KDTDSEEEIREA
40 50 60 70 80
170 180 190 200 210 220
pF1KE0 FREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
:: :: .:.: ::..::: .. : ::.:...::::.....:..::: :..::::.::.
CCDS18 FRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA
90 100 110 120 130 140
CCDS18 K
>>CCDS33061.1 CALM3 gene_id:808|Hs108|chr19 (149 aa)
initn: 374 init1: 148 opt: 403 Z-score: 366.6 bits: 74.4 E(32554): 4.2e-14
Smith-Waterman score: 403; 43.0% identity (74.5% similar) in 149 aa overlap (74-219:4-147)
50 60 70 80 90 100
pF1KE0 GVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCREL
.: :.: :.. ::. ::.: :: : .::
CCDS33 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKEL
10 20 30
110 120 130 140 150 160
pF1KE0 GACMRTLGYMPTEMELIEISQQISG---GKVDFEDFVELMGPKLLAETADMIGVRELRDA
:. ::.:: ::: :: .. ..... : .:: .:. .:. :. : . .:.:.:
CCDS33 GTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM----KDTDSEEEIREA
40 50 60 70 80
170 180 190 200 210 220
pF1KE0 FREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
:: :: .:.: ::..::: .. : ::.:...::::.....:..::: :..::::.::.
CCDS33 FRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA
90 100 110 120 130 140
CCDS33 K
>>CCDS9892.1 CALM1 gene_id:801|Hs108|chr14 (149 aa)
initn: 374 init1: 148 opt: 403 Z-score: 366.6 bits: 74.4 E(32554): 4.2e-14
Smith-Waterman score: 403; 43.0% identity (74.5% similar) in 149 aa overlap (74-219:4-147)
50 60 70 80 90 100
pF1KE0 GVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCREL
.: :.: :.. ::. ::.: :: : .::
CCDS98 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKEL
10 20 30
110 120 130 140 150 160
pF1KE0 GACMRTLGYMPTEMELIEISQQISG---GKVDFEDFVELMGPKLLAETADMIGVRELRDA
:. ::.:: ::: :: .. ..... : .:: .:. .:. :. : . .:.:.:
CCDS98 GTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM----KDTDSEEEIREA
40 50 60 70 80
170 180 190 200 210 220
pF1KE0 FREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
:: :: .:.: ::..::: .. : ::.:...::::.....:..::: :..::::.::.
CCDS98 FRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA
90 100 110 120 130 140
CCDS98 K
220 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:13:54 2016 done: Thu Nov 3 18:13:54 2016
Total Scan time: 2.480 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]