Result of FASTA (ccds) for
pF1KE0259
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0259, 250 aa
1>>>pF1KE0259 250 - 250 aa - 250 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1626+/-0.000859; mu= 11.6365+/- 0.051
mean_var=135.3937+/-28.104, 0's: 0 Z-trim(111.2): 138 B-trim: 229 in 1/51
Lambda= 0.110224
statistics sampled from 11988 (12165) to 11988 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.374), width: 16
Scan time: 2.280
The best scores are: opt bits E(32554)
CCDS34665.1 TRIM73 gene_id:375593|Hs108|chr7 ( 250) 1739 287.5 6e-78
CCDS5545.1 TRIM74 gene_id:378108|Hs108|chr7 ( 250) 1729 285.9 1.8e-77
CCDS34654.1 TRIM50 gene_id:135892|Hs108|chr7 ( 487) 1578 262.2 4.8e-70
CCDS32437.1 TRIM72 gene_id:493829|Hs108|chr16 ( 477) 387 72.8 4.8e-13
CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 ( 513) 360 68.5 1e-11
CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 347 66.4 4e-11
CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 ( 503) 347 66.4 4.1e-11
CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 ( 518) 347 66.4 4.2e-11
CCDS31392.1 TRIM5 gene_id:85363|Hs108|chr11 ( 326) 344 65.7 4.3e-11
CCDS31394.1 TRIM5 gene_id:85363|Hs108|chr11 ( 347) 344 65.8 4.5e-11
CCDS31393.1 TRIM5 gene_id:85363|Hs108|chr11 ( 493) 344 65.9 5.7e-11
>>CCDS34665.1 TRIM73 gene_id:375593|Hs108|chr7 (250 aa)
initn: 1739 init1: 1739 opt: 1739 Z-score: 1512.9 bits: 287.5 E(32554): 6e-78
Smith-Waterman score: 1739; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)
10 20 30 40 50 60
pF1KE0 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
250
pF1KE0 IWKFHSMASR
::::::::::
CCDS34 IWKFHSMASR
250
>>CCDS5545.1 TRIM74 gene_id:378108|Hs108|chr7 (250 aa)
initn: 1729 init1: 1729 opt: 1729 Z-score: 1504.4 bits: 285.9 E(32554): 1.8e-77
Smith-Waterman score: 1729; 99.6% identity (99.6% similar) in 250 aa overlap (1-250:1-250)
10 20 30 40 50 60
pF1KE0 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAWQVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
250
pF1KE0 IWKFHSMASR
::::::::::
CCDS55 IWKFHSMASR
250
>>CCDS34654.1 TRIM50 gene_id:135892|Hs108|chr7 (487 aa)
initn: 1578 init1: 1578 opt: 1578 Z-score: 1371.1 bits: 262.2 E(32554): 4.8e-70
Smith-Waterman score: 1578; 93.2% identity (96.8% similar) in 250 aa overlap (1-250:1-250)
10 20 30 40 50 60
pF1KE0 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
::::::: ::::::::::::::::: :::::::::::::::::: :::...:::.: :.:
CCDS34 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
:::::::: ::::::::::.::::::::::::::::::.:::::::::::::::::::::
CCDS34 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS34 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
250
pF1KE0 IWKFHSMASR
: ::::::::
CCDS34 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
250 260 270 280 290 300
>>CCDS32437.1 TRIM72 gene_id:493829|Hs108|chr16 (477 aa)
initn: 331 init1: 210 opt: 387 Z-score: 347.6 bits: 72.8 E(32554): 4.8e-13
Smith-Waterman score: 387; 29.1% identity (58.6% similar) in 251 aa overlap (10-250:8-247)
10 20 30 40 50
pF1KE0 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCL--VSLSYHLDTKVRCPMCWQ
:...:.::.::..: . .::::.:..:: :. : : :: :
CCDS32 MSAAPGLLHQELSCPLCLQLFDAPVTAECGHSFCRACLGRVAGEPAADGTVLCPCCQA
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 VVDGSSSLPNVSLAWVIEAL-RLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSH
. .. :..:: ..:.: ..: : .: .:::..::.:. :.::.:. ::::
CCDS32 PTRPQALSTNLQLARLVEGLAQVPQGH----CEEHLDPLSIYCEQDRALVCGVCASLGSH
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 QHHPVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRR
. : . :.. . .:.: .: .:.. . .. .: : .. ... . : .. .
CCDS32 RGHRLLPAAEAHARLKTQLPQQKLQLQEACMRKEKSVAVLEHQLVEVEETVRQFRGAVGE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 EFQELR-------HPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLE
.. ..: .:.: : : : ..::. ::: : : : :::
CCDS32 QLGKMRVFLAALEGSLDREAERVRGEAGVALRRELGSLNSYLEQ-------LRQMEKVLE
180 190 200 210 220
240 250
pF1KE0 QFGNEDHHEFIWKFHSMASR
. ... . ::. :. ..::
CCDS32 EVADKPQTEFLMKYCLVTSRLQKILAESPPPARLDIQLPIISDDFKFQVWRKMFRALMPA
230 240 250 260 270 280
>>CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 (513 aa)
initn: 382 init1: 187 opt: 360 Z-score: 324.0 bits: 68.5 E(32554): 1e-11
Smith-Waterman score: 360; 28.2% identity (56.5% similar) in 248 aa overlap (10-250:10-257)
10 20 30 40 50 60
pF1KE0 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
:... ::.::. : : .::.:::. : .::. .:.: ::.: ..
CCDS46 MASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRETF
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 DGSSSLPNVSLAWV---IEALRL--PGDP--EPKVCVHHRNPLSLFCEKDQELICGLCGL
:: :: : .. :: :. : : :: .::.::.:.::.:: :: .:
CCDS46 PQRHMRPNRHLANVTQLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEEDQMPICVVCDR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 LGSHQHHPVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSW
:. : : :. . .::.. ...::. . . :. . :..... ...
CCDS46 SREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLSLTQMERE
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 VIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFG
: ::..: : . :.. : : . .. :.. . : . . .:.. ::.
CCDS46 KIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQ
190 200 210 220 230 240
240 250
pF1KE0 NEDHHEFIWKFHSMASR
.. .:.. . . ::
CCDS46 QQPTRELLQDIGDTLSRAERIRIPEPWITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQS
250 260 270 280 290 300
>>CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 (488 aa)
initn: 356 init1: 198 opt: 347 Z-score: 313.1 bits: 66.4 E(32554): 4e-11
Smith-Waterman score: 347; 28.9% identity (62.1% similar) in 190 aa overlap (6-190:19-208)
10 20 30 40
pF1KE0 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHL
.: .:. . .: .::: .:: ....:::..::.:.. :
CCDS34 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 DTKVRCPMCWQVVDGSSSLPNVSLAWVIEALRLPGDPEPKV-----CVHHRNPLSLFCEK
. ::.: .. : :: .:. ..: . . :. : .:.. ::::: .
CCDS34 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 DQELICGLCGLLGSHQHHPVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRT
::: .: .:.. .:. : :.:.. . ...::.: . :.:. ... . .. :.
CCDS34 DQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 RIVNESDVFSWVIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERL
.. . : :::.::.. .:::.
CCDS34 ELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDL
190 200 210 220 230 240
>>CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 (503 aa)
initn: 356 init1: 198 opt: 347 Z-score: 312.9 bits: 66.4 E(32554): 4.1e-11
Smith-Waterman score: 347; 28.9% identity (62.1% similar) in 190 aa overlap (6-190:19-208)
10 20 30 40
pF1KE0 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHL
.: .:. . .: .::: .:: ....:::..::.:.. :
CCDS78 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 DTKVRCPMCWQVVDGSSSLPNVSLAWVIEALRLPGDPEPKV-----CVHHRNPLSLFCEK
. ::.: .. : :: .:. ..: . . :. : .:.. ::::: .
CCDS78 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 DQELICGLCGLLGSHQHHPVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRT
::: .: .:.. .:. : :.:.. . ...::.: . :.:. ... . .. :.
CCDS78 DQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 RIVNESDVFSWVIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERL
.. . : :::.::.. .:::.
CCDS78 ELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDL
190 200 210 220 230 240
>>CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 (518 aa)
initn: 356 init1: 198 opt: 347 Z-score: 312.8 bits: 66.4 E(32554): 4.2e-11
Smith-Waterman score: 347; 28.9% identity (62.1% similar) in 190 aa overlap (6-190:19-208)
10 20 30 40
pF1KE0 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHL
.: .:. . .: .::: .:: ....:::..::.:.. :
CCDS34 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 DTKVRCPMCWQVVDGSSSLPNVSLAWVIEALRLPGDPEPKV-----CVHHRNPLSLFCEK
. ::.: .. : :: .:. ..: . . :. : .:.. ::::: .
CCDS34 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 DQELICGLCGLLGSHQHHPVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRT
::: .: .:.. .:. : :.:.. . ...::.: . :.:. ... . .. :.
CCDS34 DQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 RIVNESDVFSWVIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERL
.. . : :::.::.. .:::.
CCDS34 ELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDL
190 200 210 220 230 240
>>CCDS31392.1 TRIM5 gene_id:85363|Hs108|chr11 (326 aa)
initn: 341 init1: 163 opt: 344 Z-score: 312.7 bits: 65.7 E(32554): 4.3e-11
Smith-Waterman score: 344; 28.5% identity (62.1% similar) in 235 aa overlap (7-230:6-240)
10 20 30 40 50
pF1KE0 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVS--LSYHLDT-KVRCPMCW
:....... ::::::.. . : :.::::.:..::.. . :: . ::.:
CCDS31 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QVVDGSSSLPNVSLAWVIEALR-LPGDPE-PKV--CVHHRNPLSLFCEKDQELICGLCGL
. . :: .: ..: :: . .:: :: :..: . : :::..: ..:: ::
CCDS31 ISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCER
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 LGSHQHHPVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSW
:. : . . : ... .: : . :.:.:....:: : . .... .. . .
CCDS31 SQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKT
120 130 140 150 160 170
180 190 200 210 220
pF1KE0 VIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQ----LEQAQGTRERLAQAECVL
. .:..:: .: :.. :... . . .. :: . ..:.:. :: ... : :
CCDS31 NVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRL
180 190 200 210 220 230
230 240 250
pF1KE0 EQFGNEDHHEFIWKFHSMASR
.
CCDS31 QGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWG
240 250 260 270 280 290
>>CCDS31394.1 TRIM5 gene_id:85363|Hs108|chr11 (347 aa)
initn: 341 init1: 163 opt: 344 Z-score: 312.3 bits: 65.8 E(32554): 4.5e-11
Smith-Waterman score: 344; 28.5% identity (62.1% similar) in 235 aa overlap (7-230:6-240)
10 20 30 40 50
pF1KE0 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVS--LSYHLDT-KVRCPMCW
:....... ::::::.. . : :.::::.:..::.. . :: . ::.:
CCDS31 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QVVDGSSSLPNVSLAWVIEALR-LPGDPE-PKV--CVHHRNPLSLFCEKDQELICGLCGL
. . :: .: ..: :: . .:: :: :..: . : :::..: ..:: ::
CCDS31 ISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCER
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 LGSHQHHPVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSW
:. : . . : ... .: : . :.:.:....:: : . .... .. . .
CCDS31 SQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKT
120 130 140 150 160 170
180 190 200 210 220
pF1KE0 VIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQ----LEQAQGTRERLAQAECVL
. .:..:: .: :.. :... . . .. :: . ..:.:. :: ... : :
CCDS31 NVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRL
180 190 200 210 220 230
230 240 250
pF1KE0 EQFGNEDHHEFIWKFHSMASR
.
CCDS31 QGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWG
240 250 260 270 280 290
250 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:44:15 2016 done: Thu Nov 3 18:44:16 2016
Total Scan time: 2.280 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]