FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0252, 217 aa
  1>>>pF1KE0252 217 - 217 aa - 217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1631+/-0.000756; mu= 13.9884+/- 0.045
 mean_var=57.1008+/-11.445, 0's: 0 Z-trim(107.4): 14  B-trim: 0 in 0/48
 Lambda= 0.169728
 statistics sampled from 9566 (9571) to 9566 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.294), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS31354.1 C11orf40 gene_id:143501|Hs108|chr11    ( 217) 1482 370.8 3.7e-103


>>CCDS31354.1 C11orf40 gene_id:143501|Hs108|chr11         (217 aa)
 initn: 1482 init1: 1482 opt: 1482  Z-score: 1965.5  bits: 370.8 E(32554): 3.7e-103
Smith-Waterman score: 1482; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KE0 MALVQALVPREREPKLSILQMDRGDPQHSSHWCPEREKVKLLTLKPRETSKNILINFYRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MALVQALVPREREPKLSILQMDRGDPQHSSHWCPEREKVKLLTLKPRETSKNILINFYRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FNLDKDVFIHQANHPLTVPSSVVMGDNGHTLAEDDKRPCFRVLPCYLERVSSGISISWIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FNLDKDVFIHQANHPLTVPSSVVMGDNGHTLAEDDKRPCFRVLPCYLERVSSGISISWIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 APLPVGAMKHQLLCDLMDLITLSFWLAGQCMSLKATNMQHCKCSIATSDWAIELDRTDYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 APLPVGAMKHQLLCDLMDLITLSFWLAGQCMSLKATNMQHCKCSIATSDWAIELDRTDYK
              130       140       150       160       170       180

              190       200       210       
pF1KE0 TLPSEYSILALLQVFAGKNCMDRVLLHVDVNYLKSLP
       :::::::::::::::::::::::::::::::::::::
CCDS31 TLPSEYSILALLQVFAGKNCMDRVLLHVDVNYLKSLP
              190       200       210       




217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:05:26 2016 done: Thu Nov  3 19:05:26 2016
 Total Scan time:  2.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]