FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0250, 196 aa
  1>>>pF1KE0250 196 - 196 aa - 196 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6350+/-0.000838; mu= 12.1766+/- 0.051
 mean_var=84.8257+/-16.395, 0's: 0 Z-trim(109.2): 88  B-trim: 0 in 0/52
 Lambda= 0.139255
 statistics sampled from 10618 (10718) to 10618 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.329), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS10617.1 CHP2 gene_id:63928|Hs108|chr16         ( 196) 1286 267.6 3.5e-72
CCDS10073.1 CHP1 gene_id:11261|Hs108|chr15         ( 195)  806 171.2 3.7e-43
CCDS46310.1 PPP3R1 gene_id:5534|Hs108|chr2         ( 170)  270 63.4 8.7e-11


>>CCDS10617.1 CHP2 gene_id:63928|Hs108|chr16              (196 aa)
 initn: 1286 init1: 1286 opt: 1286  Z-score: 1409.4  bits: 267.6 E(32554): 3.5e-72
Smith-Waterman score: 1286; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE0 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS
              130       140       150       160       170       180

              190      
pF1KE0 LEKMDVEQKMSIRILK
       ::::::::::::::::
CCDS10 LEKMDVEQKMSIRILK
              190      

>>CCDS10073.1 CHP1 gene_id:11261|Hs108|chr15              (195 aa)
 initn: 796 init1: 454 opt: 806  Z-score: 888.3  bits: 171.2 E(32554): 3.7e-43
Smith-Waterman score: 806; 61.0% identity (87.2% similar) in 195 aa overlap (1-195:1-194)

               10        20        30        40        50        60
pF1KE0 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN
       ::::.:      . . :..:::::.... ::. :: .::....: ::: :.:.:  ::.:
CCDS10 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF
       :::::::..:::.: ..:.: ::.:.::::::.::.. ...: . ::::::: ::::.::
CCDS10 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNE-KSKDVNGPEPLNSRSNKLHFAF
               70        80        90        100       110         

              130       140       150       160       170       180
pF1KE0 QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS
       .:::::.: :::: :.:::::.::::....::: .:::::.::::.:::.:.::.::.: 
CCDS10 RLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV
     120       130       140       150       160       170         

              190      
pF1KE0 LEKMDVEQKMSIRILK
       :::.:::::::::.: 
CCDS10 LEKVDVEQKMSIRFLH
     180       190     

>>CCDS46310.1 PPP3R1 gene_id:5534|Hs108|chr2              (170 aa)
 initn: 414 init1: 267 opt: 270  Z-score: 307.2  bits: 63.4 E(32554): 8.7e-11
Smith-Waterman score: 368; 35.5% identity (66.3% similar) in 172 aa overlap (23-194:15-170)

               10        20        30        40        50        60
pF1KE0 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN
                             :.   . :: .::. :: ...: ::  .....  :  :
CCDS46         MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQN
                       10        20        30        40        50  

               70        80        90       100       110       120
pF1KE0 PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF
       :: .:.:. :  ::. .:::  :.. ...:    :..                .::..::
CCDS46 PLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKE----------------QKLRFAF
             60        70        80                        90      

              130       140       150       160       170       180
pF1KE0 QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS
       ..::.:.:: ::  :..:::..::: .. . ::..:.:.:. .::.:::: .:: ::   
CCDS46 RIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAV
        100       110       120       130       140       150      

              190      
pF1KE0 LEKMDVEQKMSIRILK
       .  .:...:: . .  
CCDS46 VGGLDIHKKMVVDV  
        160       170  




196 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:14:17 2016 done: Thu Nov  3 19:14:18 2016
 Total Scan time:  1.870 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]