FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0248, 131 aa
  1>>>pF1KE0248 131 - 131 aa - 131 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0961+/-0.000532; mu= 12.5004+/- 0.032
 mean_var=63.1127+/-12.760, 0's: 0 Z-trim(113.4): 2  B-trim: 0 in 0/52
 Lambda= 0.161442
 statistics sampled from 14029 (14030) to 14029 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.431), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS5425.2 MTURN gene_id:222166|Hs108|chr7         ( 131)  922 222.2 7.4e-59


>>CCDS5425.2 MTURN gene_id:222166|Hs108|chr7              (131 aa)
 initn: 922 init1: 922 opt: 922  Z-score: 1170.1  bits: 222.2 E(32554): 7.4e-59
Smith-Waterman score: 922; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KE0 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE
               70        80        90       100       110       120

              130 
pF1KE0 ADHPQMGVSQQ
       :::::::::::
CCDS54 ADHPQMGVSQQ
              130 




131 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:17:42 2016 done: Thu Nov  3 19:17:42 2016
 Total Scan time:  1.760 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]