Result of FASTA (ccds) for
pF1KE0239
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0239, 275 aa
1>>>pF1KE0239 275 - 275 aa - 275 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2738+/-0.000792; mu= 15.3206+/- 0.048
mean_var=64.0497+/-13.022, 0's: 0 Z-trim(108.0): 11 B-trim: 388 in 1/50
Lambda= 0.160257
statistics sampled from 9925 (9934) to 9925 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.305), width: 16
Scan time: 2.070
The best scores are: opt bits E(32554)
CCDS43173.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 275) 1906 449.0 1.7e-126
CCDS3226.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 279) 1783 420.6 6.1e-118
CCDS3225.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 277) 1782 420.4 7.1e-118
CCDS43172.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 257) 1775 418.7 2.1e-117
CCDS54683.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 173) 911 218.9 2e-57
CCDS3223.1 KCNMB2 gene_id:10242|Hs108|chr3 ( 235) 633 154.7 5.8e-38
CCDS8997.1 KCNMB4 gene_id:27345|Hs108|chr12 ( 210) 479 119.0 2.7e-27
>>CCDS43173.1 KCNMB3 gene_id:27094|Hs108|chr3 (275 aa)
initn: 1906 init1: 1906 opt: 1906 Z-score: 2384.7 bits: 449.0 E(32554): 1.7e-126
Smith-Waterman score: 1906; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KE0 MFPLLYELTAVSPSPFPQRTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MFPLLYELTAVSPSPFPQRTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 MMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 CLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKY
190 200 210 220 230 240
250 260 270
pF1KE0 STVVRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
:::::::::::::::::::::::::::::::::::
CCDS43 STVVRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
250 260 270
>>CCDS3226.1 KCNMB3 gene_id:27094|Hs108|chr3 (279 aa)
initn: 1783 init1: 1783 opt: 1783 Z-score: 2230.9 bits: 420.6 E(32554): 6.1e-118
Smith-Waterman score: 1783; 99.6% identity (100.0% similar) in 258 aa overlap (18-275:22-279)
10 20 30 40 50
pF1KE0 MFPLLYELTAVSPSPFPQRTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVM
.::::::::::::::::::::::::::::::::::::::
CCDS32 MDFSPSSELGFHFVAFILLTRHRTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 LGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 GKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 KNGTPFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KNGTPFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLL
190 200 210 220 230 240
240 250 260 270
pF1KE0 CEKYSTVVRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
:::::::::::::::::::::::::::::::::::::::
CCDS32 CEKYSTVVRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
250 260 270
>>CCDS3225.1 KCNMB3 gene_id:27094|Hs108|chr3 (277 aa)
initn: 1782 init1: 1782 opt: 1782 Z-score: 2229.7 bits: 420.4 E(32554): 7.1e-118
Smith-Waterman score: 1782; 100.0% identity (100.0% similar) in 257 aa overlap (19-275:21-277)
10 20 30 40 50
pF1KE0 MFPLLYELTAVSPSPFPQRTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLG
::::::::::::::::::::::::::::::::::::::::
CCDS32 MQPFSIPVQITLQGSRRRQGRTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 FAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 YPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 GTPFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GTPFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCE
190 200 210 220 230 240
240 250 260 270
pF1KE0 KYSTVVRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
:::::::::::::::::::::::::::::::::::::
CCDS32 KYSTVVRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
250 260 270
>>CCDS43172.1 KCNMB3 gene_id:27094|Hs108|chr3 (257 aa)
initn: 1775 init1: 1775 opt: 1775 Z-score: 2221.4 bits: 418.7 E(32554): 2.1e-117
Smith-Waterman score: 1775; 100.0% identity (100.0% similar) in 256 aa overlap (20-275:2-257)
10 20 30 40 50 60
pF1KE0 MFPLLYELTAVSPSPFPQRTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFA
:::::::::::::::::::::::::::::::::::::::::
CCDS43 MTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFA
10 20 30 40
70 80 90 100 110 120
pF1KE0 MMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYP
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 CLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 PFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKY
170 180 190 200 210 220
250 260 270
pF1KE0 STVVRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
:::::::::::::::::::::::::::::::::::
CCDS43 STVVRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
230 240 250
>>CCDS54683.1 KCNMB3 gene_id:27094|Hs108|chr3 (173 aa)
initn: 927 init1: 911 opt: 911 Z-score: 1144.5 bits: 218.9 E(32554): 2e-57
Smith-Waterman score: 911; 100.0% identity (100.0% similar) in 131 aa overlap (19-149:21-151)
10 20 30 40 50
pF1KE0 MFPLLYELTAVSPSPFPQRTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLG
::::::::::::::::::::::::::::::::::::::::
CCDS54 MQPFSIPVQITLQGSRRRQGRTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 FAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 YPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKN
:::::::::::::::::::::::::::::::
CCDS54 YPCLQVFVNLSHPGQKALLHYNEEAVQINPKRDVTDCRVKEKQTLTVSDEHKQ
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 GTPFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCE
>>CCDS3223.1 KCNMB2 gene_id:10242|Hs108|chr3 (235 aa)
initn: 593 init1: 224 opt: 633 Z-score: 795.1 bits: 154.7 E(32554): 5.8e-38
Smith-Waterman score: 633; 43.9% identity (74.1% similar) in 212 aa overlap (35-245:27-235)
10 20 30 40 50 60
pF1KE0 LYELTAVSPSPFPQRTAFPASGKKRETDYSDGDPLDVHKRLPS-SAGEDRAVMLGFAMMG
: : :: .: . . .::::::..::.:::
CCDS32 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 FSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQ
:..:.:::: :.:. .: :. ::: :: ....: . . .:.:.:: : ..:::::
CCDS32 CSIMMYFLLGITLLRSYMQSVWTEESQCTLLNASITETF-NCSFSCGPDCWKLSQYPCLQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 VFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFS
:.:::. :.: ::...::...:: :: : ::: .. .. .. . . : : .. ::
CCDS32 VYVNLTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENF--RKYQHFS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 CFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTV
:. .: .....::: : :.. ..:: ::::. . ::. ::.::.:::.::::::. . .
CCDS32 CYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRI
180 190 200 210 220 230
250 260 270
pF1KE0 VRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
:
CCDS32 NR
>>CCDS8997.1 KCNMB4 gene_id:27345|Hs108|chr12 (210 aa)
initn: 456 init1: 316 opt: 479 Z-score: 603.4 bits: 119.0 E(32554): 2.7e-27
Smith-Waterman score: 479; 31.8% identity (74.5% similar) in 192 aa overlap (48-238:11-202)
20 30 40 50 60 70
pF1KE0 QRTAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFAMMGFSVLMFFLLGTTIL
. .::... ::. .. .:. .:..: :
CCDS89 MAKLRVAYEYTEAEDKSIRLGLFLIISGVVSLFIFGFCWL
10 20 30 40
80 90 100 110 120 130
pF1KE0 KPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALL
.: . ..: :..::.. .. . . ..:.::::. :.: ..:::.::.:: :. ...:::
CCDS89 SPALQDLQATEANCTVLSVQQIGEVFECTFTCGADCRGTSQYPCVQVYVNNSESNSRALL
50 60 70 80 90 100
140 150 160 170 180 190
pF1KE0 HYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGT-PFSCFYSPASQSEDVI
: .:. . :::: : : :... . :.:... .... . :. ::.:... .. .::.
CCDS89 HSDEHQLLTNPKCSYIPPCKRENQKNLESVMNWQQYWKDEIGSQPFTCYFNQHQRPDDVL
110 120 130 140 150 160
200 210 220 230 240 250
pF1KE0 LIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVRDEVGGKVPYIE
: . .:.....::..:: .:.. :.::: .. .. :.. :
CCDS89 LHRTHDEIVLLHCFLWPLVTFVVGVLIVVLTICAKSLAVKAEAMKKRKFS
170 180 190 200 210
260 270
pF1KE0 QHQFKLCIMRRSKGRAEKS
275 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:47:27 2016 done: Thu Nov 3 19:47:27 2016
Total Scan time: 2.070 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]