Result of FASTA (ccds) for
pF1KE0238
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0238, 162 aa
1>>>pF1KE0238 162 - 162 aa - 162 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1508+/-0.000765; mu= 12.1981+/- 0.046
mean_var=54.1921+/-10.813, 0's: 0 Z-trim(106.7): 19 B-trim: 0 in 0/46
Lambda= 0.174223
statistics sampled from 9106 (9118) to 9106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.28), width: 16
Scan time: 1.860
The best scores are: opt bits E(32554)
CCDS8046.1 HRASLS2 gene_id:54979|Hs108|chr11 ( 162) 1034 267.6 2.4e-72
CCDS8047.1 PLA2G16 gene_id:11145|Hs108|chr11 ( 162) 728 190.7 3.4e-49
CCDS41662.1 RARRES3 gene_id:5920|Hs108|chr11 ( 164) 527 140.2 5.6e-34
CCDS3303.2 HRASLS gene_id:57110|Hs108|chr3 ( 273) 467 125.2 3e-29
CCDS53646.1 HRASLS5 gene_id:117245|Hs108|chr11 ( 269) 457 122.6 1.7e-28
CCDS8044.1 HRASLS5 gene_id:117245|Hs108|chr11 ( 279) 457 122.6 1.8e-28
CCDS53647.1 HRASLS5 gene_id:117245|Hs108|chr11 ( 253) 351 96.0 1.7e-20
>>CCDS8046.1 HRASLS2 gene_id:54979|Hs108|chr11 (162 aa)
initn: 1034 init1: 1034 opt: 1034 Z-score: 1412.4 bits: 267.6 E(32554): 2.4e-72
Smith-Waterman score: 1034; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)
10 20 30 40 50 60
pF1KE0 MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL
70 80 90 100 110 120
130 140 150 160
pF1KE0 RYGVSRSDQVTGAVTTVGVAAGLLAAASLVGILLARSKRERQ
::::::::::::::::::::::::::::::::::::::::::
CCDS80 RYGVSRSDQVTGAVTTVGVAAGLLAAASLVGILLARSKRERQ
130 140 150 160
>>CCDS8047.1 PLA2G16 gene_id:11145|Hs108|chr11 (162 aa)
initn: 729 init1: 709 opt: 728 Z-score: 996.7 bits: 190.7 E(32554): 3.4e-49
Smith-Waterman score: 728; 69.4% identity (89.8% similar) in 157 aa overlap (6-162:6-162)
10 20 30 40 50 60
pF1KE0 MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV
:.:. :::::: : : :::::::::::::::: ::.::::::::.::::.::::
CCDS80 MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL
::::: :::.:.:.:::::::.:.::: .::..:::::::::. :.:::.:::::::.:
CCDS80 KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL
70 80 90 100 110 120
130 140 150 160
pF1KE0 RYGVSRSDQVTGAVTTVGVAAGLLAAASLVGILLARSKRERQ
::::.::::: .. ...::. ::: ::.:....:.::..:
CCDS80 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ
130 140 150 160
>>CCDS41662.1 RARRES3 gene_id:5920|Hs108|chr11 (164 aa)
initn: 526 init1: 526 opt: 527 Z-score: 723.6 bits: 140.2 E(32554): 5.6e-34
Smith-Waterman score: 527; 55.7% identity (77.9% similar) in 149 aa overlap (1-147:1-149)
10 20 30 40 50 60
pF1KE0 MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV
:: . .:. :::::: :.:: :::.:.:::::.:::: :: :::..::.:.:.:.: :
CCDS41 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL
:.: : :.:: :::::. : .: : : . :.. :.:.:::.. ::..: ::::::..:
CCDS41 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL
70 80 90 100 110 120
130 140 150 160
pF1KE0 RYGVSRSDQVTGAVTTVGVAA--GLLAAASLVGILLARSKRERQ
::: :: :: : . ::::. :.:..:
CCDS41 RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA
130 140 150 160
>>CCDS3303.2 HRASLS gene_id:57110|Hs108|chr3 (273 aa)
initn: 473 init1: 310 opt: 467 Z-score: 638.5 bits: 125.2 E(32554): 3e-29
Smith-Waterman score: 467; 45.3% identity (78.9% similar) in 161 aa overlap (2-161:113-271)
10 20 30
pF1KE0 MALARP-RPRLGDLIEISRFGYAHWAIYVGD
.: : : :::::. : :: :::.:.::
CCDS33 PRETPGHTQLPPGARRRPRLESEMAFNDCFSLNYPGNPCPGDLIEVFRPGYQHWALYLGD
90 100 110 120 130 140
40 50 60 70 80 90
pF1KE0 GYVVHLAPASEIAGAGAASVLSALTNKAIVKKELLSVVAGGDNYRVNNKHDDRYTPLPSN
:::...::.. : :. .:. :....::.:: .::. :.:.:.::.:::.:. : ::: .
CCDS33 GYVINIAPVDGIP-ASFTSAKSVFSSKALVKMQLLKDVVGNDTYRINNKYDETYPPLPVE
150 160 170 180 190 200
100 110 120 130 140 150
pF1KE0 KIVKRAEELVGQELPYSLTSDNCEHFVNHLRYGVSRSDQVTGAVTTVGVAAGLLAAASLV
.:.::.: ..:::. :.: .::::::. :::: . :.:.. :..:: ... ... :..
CCDS33 EIIKRSEFVIGQEVAYNLLVNNCEHFVTLLRYGEGVSEQANRAISTVEFVTAAVGVFSFL
210 220 230 240 250 260
160
pF1KE0 GILLARSKRERQ
: :. ...: .
CCDS33 G-LFPKGQRAKYY
270
>>CCDS53646.1 HRASLS5 gene_id:117245|Hs108|chr11 (269 aa)
initn: 425 init1: 249 opt: 457 Z-score: 625.0 bits: 122.6 E(32554): 1.7e-28
Smith-Waterman score: 457; 52.1% identity (70.5% similar) in 146 aa overlap (2-147:114-257)
10 20 30
pF1KE0 MALARPRPRLGDLIEISRFGYAHWAIYVGDG
: ..:::: :::::: :.:: :::::: :
CCDS53 VVSLETTPSQKADWSSIPKPENEGKLIKQAAEGKPRPRPGDLIEIFRIGYEHWAIYVEDD
90 100 110 120 130 140
40 50 60 70 80 90
pF1KE0 YVVHLAPASEIAGAGAASVLSALTNKAIVKKELLSVVAGGDNYRVNNKHDDRYTPLPSNK
:::::: :: .: :. : ..:.:.:: : : : ...:::: : : ::: .:
CCDS53 CVVHLAPPSEEFEVG--SITSIFSNRAVVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVDK
150 160 170 180 190 200
100 110 120 130 140 150
pF1KE0 IVKRAEELVGQELPYSLTSDNCEHFVNHLRYGVSRSDQVTGAVTTVGVAAGLLAAASLVG
:..:....:.. . ::: ::::::: ::::: ::.:: :. . ::: . .:
CCDS53 IIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVPRSQQVEHALMEGAKAAGAVISAVVDS
210 220 230 240 250 260
160
pF1KE0 ILLARSKRERQ
CCDS53 IKPKPITA
>>CCDS8044.1 HRASLS5 gene_id:117245|Hs108|chr11 (279 aa)
initn: 425 init1: 249 opt: 457 Z-score: 624.7 bits: 122.6 E(32554): 1.8e-28
Smith-Waterman score: 457; 52.1% identity (70.5% similar) in 146 aa overlap (2-147:124-267)
10 20 30
pF1KE0 MALARPRPRLGDLIEISRFGYAHWAIYVGDG
: ..:::: :::::: :.:: :::::: :
CCDS80 VVSLETTPSQKADWSSIPKPENEGKLIKQAAEGKPRPRPGDLIEIFRIGYEHWAIYVEDD
100 110 120 130 140 150
40 50 60 70 80 90
pF1KE0 YVVHLAPASEIAGAGAASVLSALTNKAIVKKELLSVVAGGDNYRVNNKHDDRYTPLPSNK
:::::: :: .: :. : ..:.:.:: : : : ...:::: : : ::: .:
CCDS80 CVVHLAPPSEEFEVG--SITSIFSNRAVVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVDK
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE0 IVKRAEELVGQELPYSLTSDNCEHFVNHLRYGVSRSDQVTGAVTTVGVAAGLLAAASLVG
:..:....:.. . ::: ::::::: ::::: ::.:: :. . ::: . .:
CCDS80 IIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVPRSQQVEHALMEGAKAAGAVISAVVDS
220 230 240 250 260 270
160
pF1KE0 ILLARSKRERQ
CCDS80 IKPKPITA
>>CCDS53647.1 HRASLS5 gene_id:117245|Hs108|chr11 (253 aa)
initn: 353 init1: 190 opt: 351 Z-score: 481.4 bits: 96.0 E(32554): 1.7e-20
Smith-Waterman score: 351; 50.9% identity (70.5% similar) in 112 aa overlap (2-113:124-233)
10 20 30
pF1KE0 MALARPRPRLGDLIEISRFGYAHWAIYVGDG
: ..:::: :::::: :.:: :::::: :
CCDS53 VVSLETTPSQKADWSSIPKPENEGKLIKQAAEGKPRPRPGDLIEIFRIGYEHWAIYVEDD
100 110 120 130 140 150
40 50 60 70 80 90
pF1KE0 YVVHLAPASEIAGAGAASVLSALTNKAIVKKELLSVVAGGDNYRVNNKHDDRYTPLPSNK
:::::: :: .: :. : ..:.:.:: : : : ...:::: : : ::: .:
CCDS53 CVVHLAPPSEEFEVG--SITSIFSNRAVVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVDK
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE0 IVKRAEELVGQELPYSLTSDNCEHFVNHLRYGVSRSDQVTGAVTTVGVAAGLLAAASLVG
:..:....:.. . ::: ::
CCDS53 IIQRTKKMVNKIVQYSLIEGNCRARPDGRSEGCWSSYFSCSG
220 230 240 250
162 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:53:32 2016 done: Thu Nov 3 19:53:33 2016
Total Scan time: 1.860 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]