Result of FASTA (ccds) for
pF1KE0227
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0227, 110 aa
1>>>pF1KE0227 110 - 110 aa - 110 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0925+/-0.000674; mu= 5.9367+/- 0.041
mean_var=204.2826+/-38.849, 0's: 0 Z-trim(119.6): 65 B-trim: 50 in 1/51
Lambda= 0.089734
statistics sampled from 20871 (20943) to 20871 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.886), E-opt: 0.2 (0.643), width: 16
Scan time: 1.640
The best scores are: opt bits E(32554)
CCDS1020.1 LCE2B gene_id:26239|Hs108|chr1 ( 110) 941 131.8 8.5e-32
CCDS1018.1 LCE2D gene_id:353141|Hs108|chr1 ( 110) 897 126.1 4.4e-30
CCDS1019.1 LCE2C gene_id:353140|Hs108|chr1 ( 110) 888 124.9 9.9e-30
CCDS1021.1 LCE2A gene_id:353139|Hs108|chr1 ( 106) 817 115.7 5.6e-27
CCDS1024.1 LCE1E gene_id:353135|Hs108|chr1 ( 118) 636 92.3 6.8e-20
CCDS1011.1 LCE5A gene_id:254910|Hs108|chr1 ( 118) 632 91.8 9.8e-20
CCDS1023.1 LCE1F gene_id:353137|Hs108|chr1 ( 118) 630 91.5 1.2e-19
CCDS1025.1 LCE1D gene_id:353134|Hs108|chr1 ( 114) 622 90.5 2.3e-19
CCDS1026.1 LCE1C gene_id:353133|Hs108|chr1 ( 118) 622 90.5 2.4e-19
CCDS1028.1 LCE1A gene_id:353131|Hs108|chr1 ( 110) 613 89.3 5.1e-19
CCDS1027.1 LCE1B gene_id:353132|Hs108|chr1 ( 118) 612 89.2 5.9e-19
>>CCDS1020.1 LCE2B gene_id:26239|Hs108|chr1 (110 aa)
initn: 941 init1: 941 opt: 941 Z-score: 684.3 bits: 131.8 E(32554): 8.5e-32
Smith-Waterman score: 941; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KE0 MSCQQNQQQCQPPPKCPPKCTPKCPPKCPPKCLPQCPAPCSPAVSSCCGPISGGCCGPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSCQQNQQQCQPPPKCPPKCTPKCPPKCPPKCLPQCPAPCSPAVSSCCGPISGGCCGPSS
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 GGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCCHSSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCCHSSGGCC
70 80 90 100 110
>>CCDS1018.1 LCE2D gene_id:353141|Hs108|chr1 (110 aa)
initn: 897 init1: 897 opt: 897 Z-score: 653.6 bits: 126.1 E(32554): 4.4e-30
Smith-Waterman score: 897; 94.5% identity (98.2% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KE0 MSCQQNQQQCQPPPKCPPKCTPKCPPKCPPKCLPQCPAPCSPAVSSCCGPISGGCCGPSS
:::::::::::::::::::::::::::::::: ::::::::::::::::: ::.::::::
CCDS10 MSCQQNQQQCQPPPKCPPKCTPKCPPKCPPKCPPQCPAPCSPAVSSCCGPSSGSCCGPSS
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 GGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCCHSSGGCC
::::.::.::::::::::::::::::::::::::::::.:::::::::::
CCDS10 GGCCSSGGGGCCLSHHRPRLFHRRRHQSPDCCESEPSGASGCCHSSGGCC
70 80 90 100 110
>>CCDS1019.1 LCE2C gene_id:353140|Hs108|chr1 (110 aa)
initn: 888 init1: 888 opt: 888 Z-score: 647.3 bits: 124.9 E(32554): 9.9e-30
Smith-Waterman score: 888; 94.5% identity (96.4% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KE0 MSCQQNQQQCQPPPKCPPKCTPKCPPKCPPKCLPQCPAPCSPAVSSCCGPISGGCCGPSS
:::::::::::::::::::::::::::::::: ::::::: ::::::::: ::.::::::
CCDS10 MSCQQNQQQCQPPPKCPPKCTPKCPPKCPPKCPPQCPAPCFPAVSSCCGPSSGSCCGPSS
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 GGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCCHSSGGCC
::::.:::::: ::::::::::::::::::::::::::::::::::::::
CCDS10 GGCCSSGAGGCSLSHHRPRLFHRRRHQSPDCCESEPSGGSGCCHSSGGCC
70 80 90 100 110
>>CCDS1021.1 LCE2A gene_id:353139|Hs108|chr1 (106 aa)
initn: 738 init1: 738 opt: 817 Z-score: 597.8 bits: 115.7 E(32554): 5.6e-27
Smith-Waterman score: 817; 87.3% identity (90.0% similar) in 110 aa overlap (1-110:1-106)
10 20 30 40 50 60
pF1KE0 MSCQQNQQQCQPPPKCPPKCTPKCPPKCPPKCLPQCPAPCSPAVSSCCGPISGGCCGPSS
:::::::::::::::::::: :::::::: ::::::: : ::::::: :::::: ::
CCDS10 MSCQQNQQQCQPPPKCPPKC----PPKCPPKCRPQCPAPCPPPVSSCCGPSSGGCCGSSS
10 20 30 40 50
70 80 90 100 110
pF1KE0 GGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCCHSSGGCC
::::.::.:::::::::::::::.::::::::: ::::::::::::: ::
CCDS10 GGCCSSGGGGCCLSHHRPRLFHRHRHQSPDCCECEPSGGSGCCHSSGDCC
60 70 80 90 100
>>CCDS1024.1 LCE1E gene_id:353135|Hs108|chr1 (118 aa)
initn: 396 init1: 396 opt: 636 Z-score: 470.6 bits: 92.3 E(32554): 6.8e-20
Smith-Waterman score: 636; 67.2% identity (78.2% similar) in 119 aa overlap (1-110:1-118)
10 20 30 40 50
pF1KE0 MSCQQNQQQCQPPPKCPPKCTPKCP-PKCPPKCLPQCP---APCSPAVSSCCGPISGGCC
:::::.:::::::::: ::: :::: ::::::: :.:: . :: . ..::: ::: :
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GPSSGGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCC-----HSSGGCC
: ::::::.::.::::::::: . ::.: :: ::: :.:::::.:: . :::::
CCDS10 GSSSGGCCSSGGGGCCLSHHRHHRSHRHRPQSSDCC-SQPSGGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>CCDS1011.1 LCE5A gene_id:254910|Hs108|chr1 (118 aa)
initn: 698 init1: 458 opt: 632 Z-score: 467.8 bits: 91.8 E(32554): 9.8e-20
Smith-Waterman score: 634; 66.7% identity (70.6% similar) in 126 aa overlap (1-110:1-118)
10 20 30 40 50
pF1KE0 MSCQQNQQQCQPPPKC----PPKCTPKCPPKCPPKCLPQCPAPCSPAVSSCCGPISGGCC
:::::.:::::::::: :::::::::::::::: ::: ::: : :::: :
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSC--------C
10 20 30 40 50
60 70 80 90 100
pF1KE0 GPSSGGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCES------------EPSGGSGCCH
: ::::::.: .::::::::::: ::: :: .:: : . ::::::::
CCDS10 GSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
60 70 80 90 100 110
110
pF1KE0 SSGGCC
::::::
CCDS10 SSGGCC
>>CCDS1023.1 LCE1F gene_id:353137|Hs108|chr1 (118 aa)
initn: 532 init1: 399 opt: 630 Z-score: 466.4 bits: 91.5 E(32554): 1.2e-19
Smith-Waterman score: 630; 65.5% identity (79.0% similar) in 119 aa overlap (1-110:1-118)
10 20 30 40 50
pF1KE0 MSCQQNQQQCQPPPKCPPKCTPKCP-PKCPPKCLPQCP---APCSPAVSSCCGPISGGCC
:::::.:::::::::: ::: :::: ::::::: :.:: . :: . ..::: :::::
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GPSSGGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCC-----HSSGGCC
. ..::::.::.::::::::: : ::.: :: ::: :.::.::.:: . :::::
CCDS10 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCC-SQPSAGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>CCDS1025.1 LCE1D gene_id:353134|Hs108|chr1 (114 aa)
initn: 801 init1: 509 opt: 622 Z-score: 461.0 bits: 90.5 E(32554): 2.3e-19
Smith-Waterman score: 622; 68.1% identity (78.4% similar) in 116 aa overlap (1-110:1-114)
10 20 30 40 50
pF1KE0 MSCQQNQQQCQPPPKCPPKCTPKCP-PKCPPKCLPQCPAPCSPAVSSCCGPISGGCCGPS
:::::.:::::::::: :::::::: ::::::: : . :: . ..::: ::: :: .
CCDS10 MSCQQSQQQCQPPPKCTPKCTPKCPAPKCPPKC-PPVSSCCSVSSGGCCGSSSGGGCGSN
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 SGGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCC-----HSSGGCC
:::::.::.::::::::: . :::: :: ::: :.:::::.:: . :::::
CCDS10 SGGCCSSGGGGCCLSHHRRHRSHRRRPQSSDCC-SQPSGGSSCCGGGSSQHSGGCC
60 70 80 90 100 110
>>CCDS1026.1 LCE1C gene_id:353133|Hs108|chr1 (118 aa)
initn: 525 init1: 382 opt: 622 Z-score: 460.8 bits: 90.5 E(32554): 2.4e-19
Smith-Waterman score: 622; 66.4% identity (76.5% similar) in 119 aa overlap (1-110:1-118)
10 20 30 40 50
pF1KE0 MSCQQNQQQCQPPPKCPPKCTPKCP-PKCPPKCLPQCP---APCSPAVSSCCGPISGGCC
:::::.:::::::::: ::: :::: ::::::: :.:: . :: . ..::: ::: :
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GPSSGGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCC-----HSSGGCC
: ::::::.::.::::::::: : : .: :: :: :.:::::.:: . :::::
CCDS10 GSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCC-SQPSGGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>CCDS1028.1 LCE1A gene_id:353131|Hs108|chr1 (110 aa)
initn: 437 init1: 437 opt: 613 Z-score: 454.8 bits: 89.3 E(32554): 5.1e-19
Smith-Waterman score: 613; 69.0% identity (77.6% similar) in 116 aa overlap (1-110:1-110)
10 20 30 40 50
pF1KE0 MSCQQNQQQCQPPPKCPPKCTPKCP-PKCPPKCLPQCPAPCSPAVSSCCGPISGGCCGPS
:::::.:::::::::: ::: :::: ::::::: :.:: : :::::. :::::: :
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCP----P-VSSCCSVSSGGCCGSS
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 SGGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCC-----HSSGGCC
::: :.::.::::::::: . ::.: :: :: :.:::::.:: . :::::
CCDS10 SGGGCSSGGGGCCLSHHRRHRSHRHRLQSSGCC-SQPSGGSSCCGGDSGQHSGGCC
60 70 80 90 100 110
110 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:32:58 2016 done: Thu Nov 3 20:32:59 2016
Total Scan time: 1.640 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]