Result of FASTA (ccds) for
pF1KE0225
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0225, 118 aa
1>>>pF1KE0225 118 - 118 aa - 118 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2804+/-0.000723; mu= 6.5604+/- 0.044
mean_var=239.7987+/-46.523, 0's: 0 Z-trim(119.5): 68 B-trim: 46 in 1/54
Lambda= 0.082823
statistics sampled from 20726 (20796) to 20726 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.871), E-opt: 0.2 (0.639), width: 16
Scan time: 1.820
The best scores are: opt bits E(32554)
CCDS1011.1 LCE5A gene_id:254910|Hs108|chr1 ( 118) 986 128.1 1.2e-30
CCDS1018.1 LCE2D gene_id:353141|Hs108|chr1 ( 110) 650 87.9 1.4e-18
CCDS1024.1 LCE1E gene_id:353135|Hs108|chr1 ( 118) 646 87.5 2.1e-18
CCDS1026.1 LCE1C gene_id:353133|Hs108|chr1 ( 118) 641 86.9 3.1e-18
CCDS1023.1 LCE1F gene_id:353137|Hs108|chr1 ( 118) 640 86.8 3.4e-18
CCDS1019.1 LCE2C gene_id:353140|Hs108|chr1 ( 110) 633 85.9 5.8e-18
CCDS1020.1 LCE2B gene_id:26239|Hs108|chr1 ( 110) 632 85.8 6.3e-18
CCDS1028.1 LCE1A gene_id:353131|Hs108|chr1 ( 110) 628 85.3 8.8e-18
CCDS1027.1 LCE1B gene_id:353132|Hs108|chr1 ( 118) 628 85.3 9.2e-18
CCDS1021.1 LCE2A gene_id:353139|Hs108|chr1 ( 106) 621 84.5 1.5e-17
CCDS1025.1 LCE1D gene_id:353134|Hs108|chr1 ( 114) 591 80.9 1.9e-16
CCDS1022.1 LCE4A gene_id:199834|Hs108|chr1 ( 99) 518 72.1 7.5e-14
>>CCDS1011.1 LCE5A gene_id:254910|Hs108|chr1 (118 aa)
initn: 986 init1: 986 opt: 986 Z-score: 663.6 bits: 128.1 E(32554): 1.2e-30
Smith-Waterman score: 986; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGCC
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 SSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCHSSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCHSSGGCC
70 80 90 100 110
>>CCDS1018.1 LCE2D gene_id:353141|Hs108|chr1 (110 aa)
initn: 661 init1: 492 opt: 650 Z-score: 446.9 bits: 87.9 E(32554): 1.4e-18
Smith-Waterman score: 652; 68.3% identity (71.4% similar) in 126 aa overlap (1-118:1-110)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSG---
:::::.:::::::::: :::::::::::::::::::: ::: : :::::: :::
CCDS10 MSCQQNQQQCQPPPKC----PPKCTPKCPPKCPPKCPPQCPAPCSPAVSSCCGPSSGSCC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 -----GCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
::::: :::::::::::: ::: :: .:: : . ::.:::::
CCDS10 GPSSGGCCSSGGGGCCLSHHRPRLFHRRRHQSPDCCES------------EPSGASGCCH
60 70 80 90 100
pF1KE0 SSGGCC
::::::
CCDS10 SSGGCC
110
>>CCDS1024.1 LCE1E gene_id:353135|Hs108|chr1 (118 aa)
initn: 372 init1: 372 opt: 646 Z-score: 444.0 bits: 87.5 E(32554): 2.1e-18
Smith-Waterman score: 646; 69.8% identity (77.8% similar) in 126 aa overlap (1-118:1-118)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQ---CSAP----CPPPVSSCC
:::::::::::::::::::::::: :::::::::::::: ::. : .. :
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
:::::::::: :::::::::: ..: :.:::::.::. : ::::::: .:::: .
CCDS10 GSSSGGCCSSGGGGCCLSHHRHHRSHRHRPQSSDCCS----QPSGGSSCC--GGGSG--Q
70 80 90 100 110
pF1KE0 SSGGCC
:::::
CCDS10 HSGGCC
>>CCDS1026.1 LCE1C gene_id:353133|Hs108|chr1 (118 aa)
initn: 386 init1: 386 opt: 641 Z-score: 440.8 bits: 86.9 E(32554): 3.1e-18
Smith-Waterman score: 641; 69.8% identity (77.0% similar) in 126 aa overlap (1-118:1-118)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQ---CSAP----CPPPVSSCC
:::::::::::::::::::::::: :::::::::::::: ::. : .. :
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
:::::::::: :::::::::: :.: .:::::.::. : ::::::: .:::: .
CCDS10 GSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCCS----QPSGGSSCC--GGGSG--Q
70 80 90 100 110
pF1KE0 SSGGCC
:::::
CCDS10 HSGGCC
>>CCDS1023.1 LCE1F gene_id:353137|Hs108|chr1 (118 aa)
initn: 398 init1: 398 opt: 640 Z-score: 440.1 bits: 86.8 E(32554): 3.4e-18
Smith-Waterman score: 640; 69.3% identity (77.2% similar) in 127 aa overlap (1-118:1-118)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGC
:::::::::::::::::::::::: :::::::::::::: :. : ..:::::::::
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPP-VSSCCSVSSGGCCGSSSGGC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 CSSEGGGCC--------LSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCC
::: ::::: ::::: :.: :.:::::.::. : :.::::: .::::
CCDS10 CSSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCS----QPSAGSSCC--GGGSG--
60 70 80 90 100 110
pF1KE0 HSSGGCC
. :::::
CCDS10 QHSGGCC
>>CCDS1019.1 LCE2C gene_id:353140|Hs108|chr1 (110 aa)
initn: 503 init1: 466 opt: 633 Z-score: 435.9 bits: 85.9 E(32554): 5.8e-18
Smith-Waterman score: 635; 67.5% identity (70.6% similar) in 126 aa overlap (1-118:1-110)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSG---
:::::.:::::::::: :::::::::::::::::::: ::: : :::::: :::
CCDS10 MSCQQNQQQCQPPPKC----PPKCTPKCPPKCPPKCPPQCPAPCFPAVSSCCGPSSGSCC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 -----GCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
::::: .::: ::::::: ::: :: .:: : . ::::::::
CCDS10 GPSSGGCCSSGAGGCSLSHHRPRLFHRRRHQSPDCCES------------EPSGGSGCCH
60 70 80 90 100
pF1KE0 SSGGCC
::::::
CCDS10 SSGGCC
110
>>CCDS1020.1 LCE2B gene_id:26239|Hs108|chr1 (110 aa)
initn: 591 init1: 458 opt: 632 Z-score: 435.3 bits: 85.8 E(32554): 6.3e-18
Smith-Waterman score: 634; 66.7% identity (70.6% similar) in 126 aa overlap (1-118:1-110)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGS------
:::::.:::::::::: :::::::::::::::: ::: ::: : ::::::
CCDS10 MSCQQNQQQCQPPPKC----PPKCTPKCPPKCPPKCLPQCPAPCSPAVSSCCGPISGGCC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 --SSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
::::::.: .::::::::::: ::: :: .:: : . ::::::::
CCDS10 GPSSGGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCES------------EPSGGSGCCH
60 70 80 90 100
pF1KE0 SSGGCC
::::::
CCDS10 SSGGCC
110
>>CCDS1028.1 LCE1A gene_id:353131|Hs108|chr1 (110 aa)
initn: 788 init1: 453 opt: 628 Z-score: 432.7 bits: 85.3 E(32554): 8.8e-18
Smith-Waterman score: 628; 71.4% identity (79.8% similar) in 119 aa overlap (1-118:1-110)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGC
:::::::::::::::::::::::: :::::::::::::: :. : ..::::::::
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPP-VSSCCSVSSGGCCGSSSGGG
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 CSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCHSSGGCC
::: :::::::::: ..: :.: :::.::. : ::::::: .: :: . :::::
CCDS10 CSSGGGGCCLSHHRRHRSHRHRLQSSGCCS----QPSGGSSCC--GGDSG--QHSGGCC
60 70 80 90 100 110
>>CCDS1027.1 LCE1B gene_id:353132|Hs108|chr1 (118 aa)
initn: 375 init1: 375 opt: 628 Z-score: 432.4 bits: 85.3 E(32554): 9.2e-18
Smith-Waterman score: 628; 67.5% identity (76.2% similar) in 126 aa overlap (1-118:1-118)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQ---CSAP----CPPPVSSCC
:::::.:::::::::: ::::::: ::.::::::::::: ::. : .. :
CCDS10 MSCQQNQQQCQPPPKCIPKCPPKCLTPRCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
:::::::::: :::::::::: :.: .:::::.::. : ::::::: .:::: .
CCDS10 GSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCCS----QPSGGSSCC--GGGSG--Q
70 80 90 100 110
pF1KE0 SSGGCC
:::::
CCDS10 HSGGCC
>>CCDS1021.1 LCE2A gene_id:353139|Hs108|chr1 (106 aa)
initn: 550 init1: 550 opt: 621 Z-score: 428.4 bits: 84.5 E(32554): 1.5e-17
Smith-Waterman score: 637; 66.1% identity (72.9% similar) in 118 aa overlap (1-118:1-106)
10 20 30 40 50 60
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGCC
:::::.:::::::::: ::::::: ::: :.:: ::: :. : : ..::::::::::
CCDS10 MSCQQNQQQCQPPPKCPPKCPPKCPPKCRPQCPAPCPPPVSSCCGPSSGGCCGSSSGGCC
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 SSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCHSSGGCC
:: :::::::::::: :.: :: .:: :. ::::::::::: ::
CCDS10 SSGGGGCCLSHHRPRLFHRHRHQSPDCCE------------CEPSGGSGCCHSSGDCC
70 80 90 100
118 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:34:27 2016 done: Thu Nov 3 20:34:27 2016
Total Scan time: 1.820 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]