FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0216, 194 aa
  1>>>pF1KE0216 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1386+/-0.000626; mu= 6.7952+/- 0.038
 mean_var=123.1678+/-24.714, 0's: 0 Z-trim(116.4): 4  B-trim: 257 in 1/51
 Lambda= 0.115565
 statistics sampled from 17005 (17009) to 17005 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.522), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS31785.1 CCDC184 gene_id:387856|Hs108|chr12     ( 194) 1306 227.3 4.6e-60


>>CCDS31785.1 CCDC184 gene_id:387856|Hs108|chr12          (194 aa)
 initn: 1306 init1: 1306 opt: 1306  Z-score: 1191.8  bits: 227.3 E(32554): 4.6e-60
Smith-Waterman score: 1306; 99.5% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KE0 MEDGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MEDGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGGKGSFQSDPQEPET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGGKGSFQSDPQEPET
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PSPGIGDSGLLGRDPEDEEDEEEEKEMPSPATPSSHCERPESPCAGLLGGDGPLVEPLDM
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS31 PSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERPESPCAGLLGGDGPLVEPLDM
              130       140       150       160       170       180

              190    
pF1KE0 PDITLLQLEGEASL
       ::::::::::::::
CCDS31 PDITLLQLEGEASL
              190    




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:55:20 2016 done: Thu Nov  3 20:55:20 2016
 Total Scan time:  2.250 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]