Result of FASTA (omim) for
pF1KE0182
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0182, 226 aa
1>>>pF1KE0182 226 - 226 aa - 226 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1651+/-0.000328; mu= 14.5384+/- 0.021
mean_var=60.0186+/-11.904, 0's: 0 Z-trim(114.5): 12 B-trim: 452 in 1/53
Lambda= 0.165551
statistics sampled from 24402 (24413) to 24402 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.286), width: 16
Scan time: 6.690
The best scores are: opt bits E(85289)
NP_001028676 (OMIM: 615949,615972) transmembrane p ( 226) 1427 348.9 4e-96
NP_001288675 (OMIM: 615949,615972) transmembrane p ( 226) 1427 348.9 4e-96
NP_056359 (OMIM: 615949,615972) transmembrane prot ( 226) 1427 348.9 4e-96
NP_036274 (OMIM: 607089) cyclin-D1-binding protein ( 360) 172 49.3 1e-05
XP_006720511 (OMIM: 607089) PREDICTED: cyclin-D1-b ( 404) 172 49.3 1.1e-05
>>NP_001028676 (OMIM: 615949,615972) transmembrane prote (226 aa)
initn: 1427 init1: 1427 opt: 1427 Z-score: 1846.8 bits: 348.9 E(85289): 4e-96
Smith-Waterman score: 1427; 99.1% identity (99.6% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KE0 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ELELDDVVITNPHIEAILENEDWIEDASGLMSHCIAILKICHTPTEKLVAMTMGSGAKMK
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
NP_001 ELELDDVVITNPHIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLT
130 140 150 160 170 180
190 200 210 220
pF1KE0 GGLDWIDQSLSAAEERLEVLREAALASEPDKGLPGPEGFLQEQSAI
:::::::::::::::.::::::::::::::::::::::::::::::
NP_001 GGLDWIDQSLSAAEEHLEVLREAALASEPDKGLPGPEGFLQEQSAI
190 200 210 220
>>NP_001288675 (OMIM: 615949,615972) transmembrane prote (226 aa)
initn: 1427 init1: 1427 opt: 1427 Z-score: 1846.8 bits: 348.9 E(85289): 4e-96
Smith-Waterman score: 1427; 99.1% identity (99.6% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KE0 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ELELDDVVITNPHIEAILENEDWIEDASGLMSHCIAILKICHTPTEKLVAMTMGSGAKMK
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
NP_001 ELELDDVVITNPHIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLT
130 140 150 160 170 180
190 200 210 220
pF1KE0 GGLDWIDQSLSAAEERLEVLREAALASEPDKGLPGPEGFLQEQSAI
:::::::::::::::.::::::::::::::::::::::::::::::
NP_001 GGLDWIDQSLSAAEEHLEVLREAALASEPDKGLPGPEGFLQEQSAI
190 200 210 220
>>NP_056359 (OMIM: 615949,615972) transmembrane protein (226 aa)
initn: 1427 init1: 1427 opt: 1427 Z-score: 1846.8 bits: 348.9 E(85289): 4e-96
Smith-Waterman score: 1427; 99.1% identity (99.6% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KE0 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ELELDDVVITNPHIEAILENEDWIEDASGLMSHCIAILKICHTPTEKLVAMTMGSGAKMK
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
NP_056 ELELDDVVITNPHIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLT
130 140 150 160 170 180
190 200 210 220
pF1KE0 GGLDWIDQSLSAAEERLEVLREAALASEPDKGLPGPEGFLQEQSAI
:::::::::::::::.::::::::::::::::::::::::::::::
NP_056 GGLDWIDQSLSAAEEHLEVLREAALASEPDKGLPGPEGFLQEQSAI
190 200 210 220
>>NP_036274 (OMIM: 607089) cyclin-D1-binding protein 1 [ (360 aa)
initn: 118 init1: 99 opt: 172 Z-score: 223.8 bits: 49.3 E(85289): 1e-05
Smith-Waterman score: 185; 27.1% identity (55.1% similar) in 207 aa overlap (17-202:149-352)
10 20 30 40
pF1KE0 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRD------LLQR
: :. .. ..:.: ::: :.
NP_036 RGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLT
120 130 140 150 160 170
50 60 70 80
pF1KE0 YDSKPIVDLIGAMETQSE---PSELELDDVVITNP----HIEAIL---ENED--WIEDAS
. . : :: : : :.:. .: : . .: :.: : :: .
NP_036 KNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQ
180 190 200 210 220 230
90 100 110 120 130 140
pF1KE0 GLMSHCIAILKICHTPTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYP
:. :.:... .. .:. .. .: : .. :...::. .. .::: :::.. :.::
NP_036 ELIIPCLALVRASKACLKKIRMLVAENGKKDQV-AQLDDIVDISDEISPSVDDLALSIYP
240 250 260 270 280 290
150 160 170 180 190 200
pF1KE0 PLDPKLLDAR-TTALLLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEERLEVLREAAL
:. : .: ..: :.:: . .: .: :.: . :: ..: .. .. ..:
NP_036 PMCH--LTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQ
300 310 320 330 340 350
210 220
pF1KE0 ASEPDKGLPGPEGFLQEQSAI
NP_036 SELEL
360
>>XP_006720511 (OMIM: 607089) PREDICTED: cyclin-D1-bindi (404 aa)
initn: 139 init1: 99 opt: 172 Z-score: 223.0 bits: 49.3 E(85289): 1.1e-05
Smith-Waterman score: 185; 27.1% identity (55.1% similar) in 207 aa overlap (17-202:193-396)
10 20 30 40
pF1KE0 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRD------LLQR
: :. .. ..:.: ::: :.
XP_006 RGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLT
170 180 190 200 210 220
50 60 70 80
pF1KE0 YDSKPIVDLIGAMETQSE---PSELELDDVVITNP----HIEAIL---ENED--WIEDAS
. . : :: : : :.:. .: : . .: :.: : :: .
XP_006 KNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQ
230 240 250 260 270 280
90 100 110 120 130 140
pF1KE0 GLMSHCIAILKICHTPTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYP
:. :.:... .. .:. .. .: : .. :...::. .. .::: :::.. :.::
XP_006 ELIIPCLALVRASKACLKKIRMLVAENGKKDQV-AQLDDIVDISDEISPSVDDLALSIYP
290 300 310 320 330 340
150 160 170 180 190 200
pF1KE0 PLDPKLLDAR-TTALLLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEERLEVLREAAL
:. : .: ..: :.:: . .: .: :.: . :: ..: .. .. ..:
XP_006 PMCH--LTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQ
350 360 370 380 390
210 220
pF1KE0 ASEPDKGLPGPEGFLQEQSAI
XP_006 SELEL
400
226 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:23:00 2016 done: Thu Nov 3 22:23:01 2016
Total Scan time: 6.690 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]