FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0182, 226 aa
  1>>>pF1KE0182 226 - 226 aa - 226 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0869+/-0.00072; mu= 15.1205+/- 0.044
 mean_var=59.7604+/-11.774, 0's: 0 Z-trim(108.0): 7  B-trim: 39 in 1/52
 Lambda= 0.165908
 statistics sampled from 9937 (9942) to 9937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.305), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS11274.1 TMEM98 gene_id:26022|Hs108|chr17       ( 226) 1427 349.5   1e-96


>>CCDS11274.1 TMEM98 gene_id:26022|Hs108|chr17            (226 aa)
 initn: 1427 init1: 1427 opt: 1427  Z-score: 1850.0  bits: 349.5 E(32554): 1e-96
Smith-Waterman score: 1427; 99.1% identity (99.6% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KE0 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ELELDDVVITNPHIEAILENEDWIEDASGLMSHCIAILKICHTPTEKLVAMTMGSGAKMK
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS11 ELELDDVVITNPHIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLT
              130       140       150       160       170       180

              190       200       210       220      
pF1KE0 GGLDWIDQSLSAAEERLEVLREAALASEPDKGLPGPEGFLQEQSAI
       :::::::::::::::.::::::::::::::::::::::::::::::
CCDS11 GGLDWIDQSLSAAEEHLEVLREAALASEPDKGLPGPEGFLQEQSAI
              190       200       210       220      




226 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:22:59 2016 done: Thu Nov  3 22:22:59 2016
 Total Scan time:  2.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]