FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0173, 298 aa
  1>>>pF1KE0173 298 - 298 aa - 298 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2656+/-0.000709; mu= 15.4715+/- 0.043
 mean_var=59.0445+/-11.738, 0's: 0 Z-trim(107.8): 13  B-trim: 4 in 1/53
 Lambda= 0.166911
 statistics sampled from 9804 (9808) to 9804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.301), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS1734.1 KHK gene_id:3795|Hs108|chr2             ( 298) 1981 485.1 2.7e-137
CCDS1735.1 KHK gene_id:3795|Hs108|chr2             ( 298) 1819 446.1 1.5e-125


>>CCDS1734.1 KHK gene_id:3795|Hs108|chr2                  (298 aa)
 initn: 1981 init1: 1981 opt: 1981  Z-score: 2578.3  bits: 485.1 E(32554): 2.7e-137
Smith-Waterman score: 1981; 99.7% identity (100.0% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KE0 MEEKQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFM
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS17 MEEKQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLL
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KE0 HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV
              250       260       270       280       290        

>>CCDS1735.1 KHK gene_id:3795|Hs108|chr2                  (298 aa)
 initn: 1819 init1: 1819 opt: 1819  Z-score: 2367.4  bits: 446.1 E(32554): 1.5e-125
Smith-Waterman score: 1819; 90.3% identity (96.6% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KE0 MEEKQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFM
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS17 MEEKQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDV
       :::::::::::.. :.:: .::.  ...:. :..: .  :::...:.:::. .: :::::
CCDS17 GSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSCCIINNSNGNRTIVLHDTSLPDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLL
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KE0 HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV
              250       260       270       280       290        




298 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:50:40 2016 done: Thu Nov  3 22:50:40 2016
 Total Scan time:  2.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]