Result of FASTA (ccds) for
pF1KE0161
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0161, 265 aa
1>>>pF1KE0161 265 - 265 aa - 265 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2130+/-0.000833; mu= 15.5051+/- 0.050
mean_var=64.8709+/-13.316, 0's: 0 Z-trim(106.1): 23 B-trim: 0 in 0/50
Lambda= 0.159239
statistics sampled from 8763 (8781) to 8763 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.27), width: 16
Scan time: 2.060
The best scores are: opt bits E(32554)
CCDS46860.1 SYNPR gene_id:132204|Hs108|chr3 ( 265) 1777 416.8 7.7e-117
CCDS46859.1 SYNPR gene_id:132204|Hs108|chr3 ( 285) 1717 403.0 1.2e-112
CCDS14321.1 SYP gene_id:6855|Hs108|chrX ( 313) 1000 238.4 4.8e-63
CCDS41365.1 SYPL2 gene_id:284612|Hs108|chr1 ( 272) 746 180.0 1.6e-45
CCDS47685.1 SYPL1 gene_id:6856|Hs108|chr7 ( 241) 622 151.4 5.3e-37
CCDS5736.1 SYPL1 gene_id:6856|Hs108|chr7 ( 259) 622 151.5 5.7e-37
>>CCDS46860.1 SYNPR gene_id:132204|Hs108|chr3 (265 aa)
initn: 1777 init1: 1777 opt: 1777 Z-score: 2211.1 bits: 416.8 E(32554): 7.7e-117
Smith-Waterman score: 1777; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)
10 20 30 40 50 60
pF1KE0 MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDIAFAYPFRLHQVTFEVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDIAFAYPFRLHQVTFEVPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLNTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLNTSV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSSYNQGGYNQDSYGSSSGYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSSYNQGGYNQDSYGSSSGYSQ
190 200 210 220 230 240
250 260
pF1KE0 QASLGPTSDEFGQQPTGPTSFTNQI
:::::::::::::::::::::::::
CCDS46 QASLGPTSDEFGQQPTGPTSFTNQI
250 260
>>CCDS46859.1 SYNPR gene_id:132204|Hs108|chr3 (285 aa)
initn: 1717 init1: 1717 opt: 1717 Z-score: 2136.2 bits: 403.0 E(32554): 1.2e-112
Smith-Waterman score: 1717; 100.0% identity (100.0% similar) in 257 aa overlap (9-265:29-285)
10 20 30 40
pF1KE0 MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESNLS
::::::::::::::::::::::::::::::::
CCDS46 MDPVSQLASAGTFRVLKEPLAFLRALELLFAIFAFATCGGYSGGLRLSVDCVNKTESNLS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 IDIAFAYPFRLHQVTFEVPTCEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IDIAFAYPFRLHQVTFEVPTCEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVY
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 IFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 PSNKCMAIHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PSNKCMAIHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSS
190 200 210 220 230 240
230 240 250 260
pF1KE0 SYNQGGYNQDSYGSSSGYSQQASLGPTSDEFGQQPTGPTSFTNQI
:::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SYNQGGYNQDSYGSSSGYSQQASLGPTSDEFGQQPTGPTSFTNQI
250 260 270 280
>>CCDS14321.1 SYP gene_id:6855|Hs108|chrX (313 aa)
initn: 775 init1: 675 opt: 1000 Z-score: 1245.4 bits: 238.4 E(32554): 4.8e-63
Smith-Waterman score: 1038; 58.4% identity (78.6% similar) in 281 aa overlap (9-265:35-313)
10 20 30
pF1KE0 MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESN
.::::::::::.::: :.:::::.:::::.
CCDS14 ADMDVVNQLVAGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTESD
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 LSIDIAFAYPFRLHQVTFEVPTCEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATV
:::.. : :::::::: :..:::.: :. :.:: ::::::::::::::::::..: .
CCDS14 LSIEVEFEYPFRLHQVYFDAPTCRGGTT-KVFLVGDYSSSAEFFVTVAVFAFLYSMGALA
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 VYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSAC
.:::.::::::::.::..::..:.::.:.:::.::::::::::::.::::.... : .:
CCDS14 TYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPVC
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 KQPSNKCMAIHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKH
.: .: : ...:: :.:::::::::::..::.::.::::::::: . : ::.
CCDS14 RQTGNTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAPEKQ
190 200 210 220 230 240
220 230 240 250
pF1KE0 --------SSSYNQG--GYN-QDSYGSSSGY---------SQQASLGPTSDEFGQQ---P
...:.:: ::. ::::: ..:: : .. :: .: .::: :
CCDS14 PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGD-YGQQGYGP
250 260 270 280 290 300
260
pF1KE0 TG-PTSFTNQI
: ::::.::.
CCDS14 QGAPTSFSNQM
310
>>CCDS41365.1 SYPL2 gene_id:284612|Hs108|chr1 (272 aa)
initn: 548 init1: 548 opt: 746 Z-score: 930.9 bits: 180.0 E(32554): 1.6e-45
Smith-Waterman score: 746; 48.1% identity (73.6% similar) in 235 aa overlap (9-241:44-272)
10 20 30
pF1KE0 MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESN
:::::::..::.::: : : :....
CCDS41 SPRQQVDRLLVGLRWRRLEEPLGFIKVLQWLFAIFAFGSCGSYSGETGAMVRCNNEAKDV
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE0 LSIDIAFAYPFRLHQVTFEVPTCEGKERQK-LALIGDSSSSAEFFVTVAVFAFLYSLAAT
:: .::.::::::.. .:.: :. . .: . :.:: :. ::::::...:.:.:..::
CCDS41 SSIIVAFGYPFRLHRIQYEMPLCDEESSSKTMHLMGDFSAPAEFFVTLGIFSFFYTMAAL
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE0 VVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSA
:.:. :.: : ::.: ::.:: ::: :.:.:::...::.:::.::: :: :. . ::.
CCDS41 VIYLRFHNLYTENKRFPLVDFCVTVSFTFFWLVAAAAWGKGLTDVKGATRPSSLTAAMSV
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE0 CKQPSNKCMAIHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEK
:. : : .: :. : ::.:::.::.::::: ::::::: ::..:: .:
CCDS41 CHGEEAVCSAGATPSMGLANISVLFGFINFFLWAGNCWFVFKETPWHGQGQGQDQD----
200 210 220 230 240
220 230 240 250 260
pF1KE0 HSSSYNQG-GYNQDSYGSSSGYSQQASLGPTSDEFGQQPTGPTSFTNQI
.. .:: : .:.: . ... .:
CCDS41 --QDQDQGQGPSQESAAEQGAVEKQ
250 260 270
>>CCDS47685.1 SYPL1 gene_id:6856|Hs108|chr7 (241 aa)
initn: 646 init1: 301 opt: 622 Z-score: 777.7 bits: 151.4 E(32554): 5.3e-37
Smith-Waterman score: 623; 44.5% identity (71.8% similar) in 220 aa overlap (11-226:26-234)
10 20 30 40
pF1KE0 MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDIAF
.:::::::::..: ...:.: . : .. .:
CCDS47 MSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTVTATF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 AYPFRLHQVTFEVPT----CEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYI
.:::::....:. : :. . .. .:::: ::::.:.:: :::.::: .:: ..:.
CCDS47 GYPFRLNEASFQPPPGVNICDVNWKD-YVLIGDYSSSAQFYVTFAVFVFLYCIAALLLYV
70 80 90 100 110
110 120 130 140 150 160
pF1KE0 FFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQP
. . : .. . :.:::.::.: .:::::..:::::.:.:.:.:: .... . ::.
CCDS47 GYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATG-HNIIDELPPCKKK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 SNKCMAIHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSS
. :. :.:::.::.:::::.:::.:: :::.:::. :: :. ::
CCDS47 AVLCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSP-----SNTSAPHS--
180 190 200 210 220 230
230 240 250 260
pF1KE0 YNQGGYNQDSYGSSSGYSQQASLGPTSDEFGQQPTGPTSFTNQI
:::
CCDS47 --QGGIPPPTGI
240
>>CCDS5736.1 SYPL1 gene_id:6856|Hs108|chr7 (259 aa)
initn: 629 init1: 301 opt: 622 Z-score: 777.3 bits: 151.5 E(32554): 5.7e-37
Smith-Waterman score: 623; 44.5% identity (71.8% similar) in 220 aa overlap (11-226:44-252)
10 20 30 40
pF1KE0 MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESNLS
.:::::::::..: ...:.: . : .
CCDS57 RLGQRMSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKT
20 30 40 50 60 70
50 60 70 80 90
pF1KE0 IDIAFAYPFRLHQVTFEVPT----CEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAA
. .:.:::::....:. : :. . .. .:::: ::::.:.:: :::.::: .::
CCDS57 VTATFGYPFRLNEASFQPPPGVNICDVNWKD-YVLIGDYSSSAQFYVTFAVFVFLYCIAA
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE0 TVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMS
..:. . . : .. . :.:::.::.: .:::::..:::::.:.:.:.:: .... .
CCDS57 LLLYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATG-HNIIDELP
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE0 ACKQPSNKCMAIHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPME
::. . :. :.:::.::.:::::.:::.:: :::.:::. :: :.
CCDS57 PCKKKAVLCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSP-----SNTSA
200 210 220 230 240
220 230 240 250 260
pF1KE0 KHSSSYNQGGYNQDSYGSSSGYSQQASLGPTSDEFGQQPTGPTSFTNQI
:: :::
CCDS57 PHS----QGGIPPPTGI
250
265 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:23:05 2016 done: Thu Nov 3 23:23:05 2016
Total Scan time: 2.060 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]