FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0160, 93 aa
  1>>>pF1KE0160 93 - 93 aa - 93 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7071+/-0.000668; mu= 10.9863+/- 0.040
 mean_var=44.2386+/- 8.879, 0's: 0 Z-trim(107.2): 18  B-trim: 0 in 0/51
 Lambda= 0.192830
 statistics sampled from 9443 (9453) to 9443 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.29), width:  16
 Scan time:  1.220

The best scores are:                                      opt bits E(32554)
CCDS43073.1 HIGD1A gene_id:25994|Hs108|chr3        (  93)  606 175.3 4.8e-45
CCDS46806.1 HIGD1A gene_id:25994|Hs108|chr3        ( 107)  606 175.3 5.5e-45
CCDS44882.1 HIGD1C gene_id:613227|Hs108|chr12      (  97)  351 104.4 1.1e-23
CCDS11488.1 HIGD1B gene_id:51751|Hs108|chr17       (  99)  285 86.0 3.9e-18


>>CCDS43073.1 HIGD1A gene_id:25994|Hs108|chr3             (93 aa)
 initn: 606 init1: 606 opt: 606  Z-score: 922.2  bits: 175.3 E(32554): 4.8e-45
Smith-Waterman score: 606; 98.9% identity (100.0% similar) in 93 aa overlap (1-93:1-93)

               10        20        30        40        50        60
pF1KE0 MSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHL
               10        20        30        40        50        60

               70        80        90   
pF1KE0 IHMRVAAQGFVVGAMTVGMGYSMYREFWAKPEP
       :::::::::::::::::::::::::::::::.:
CCDS43 IHMRVAAQGFVVGAMTVGMGYSMYREFWAKPKP
               70        80        90   

>>CCDS46806.1 HIGD1A gene_id:25994|Hs108|chr3             (107 aa)
 initn: 606 init1: 606 opt: 606  Z-score: 921.2  bits: 175.3 E(32554): 5.5e-45
Smith-Waterman score: 606; 98.9% identity (100.0% similar) in 93 aa overlap (1-93:15-107)

                             10        20        30        40      
pF1KE0               MSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLY
                     ::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MEQKLVEEILQAITMSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLY
               10        20        30        40        50        60

         50        60        70        80        90   
pF1KE0 KLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYREFWAKPEP
       :::::::::::::::::::::::::::::::::::::::::::::.:
CCDS46 KLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYREFWAKPKP
               70        80        90       100       

>>CCDS44882.1 HIGD1C gene_id:613227|Hs108|chr12           (97 aa)
 initn: 340 init1: 326 opt: 351  Z-score: 538.5  bits: 104.4 E(32554): 1.1e-23
Smith-Waterman score: 351; 62.1% identity (86.2% similar) in 87 aa overlap (1-87:1-86)

               10        20        30        40        50        60
pF1KE0 MSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHL
       ::.:.  :  . .: : :.::::....::::.:::::...:. :::::: : . ::::::
CCDS44 MSSDNQWS-ADEDEGQLSRLIRKSRDSPFVPIGIAGFVTVVSCGLYKLKYRRDQKMSIHL
                10        20        30        40        50         

               70        80        90        
pF1KE0 IHMRVAAQGFVVGAMTVGMGYSMYREFWAKPEP     
       ::::::::::::::.:.:. ::::...           
CCDS44 IHMRVAAQGFVVGAVTLGVLYSMYKDYIRPRFFSESKK
      60        70        80        90       

>>CCDS11488.1 HIGD1B gene_id:51751|Hs108|chr17            (99 aa)
 initn: 295 init1: 273 opt: 285  Z-score: 439.1  bits: 86.0 E(32554): 3.9e-18
Smith-Waterman score: 285; 50.0% identity (79.5% similar) in 88 aa overlap (1-87:1-88)

               10         20        30        40        50         
pF1KE0 MSTDTGVSLPSYEEDQGS-KLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIH
       ::..    .:  .::  : ::.::..:.:.::.:..:  ...:: .:.:.:::.::::::
CCDS11 MSANRRWWVPPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIH
               10        20        30        40        50        60

      60        70        80        90        
pF1KE0 LIHMRVAAQGFVVGAMTVGMGYSMYREFWAKPEP     
       ::: :::::. .:::. .:  :.:: ..           
CCDS11 LIHTRVAAQACAVGAIMLGAVYTMYSDYVKRMAQDAGEK
               70        80        90         




93 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:24:55 2016 done: Thu Nov  3 23:24:56 2016
 Total Scan time:  1.220 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]