FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0152, 131 aa
  1>>>pF1KE0152 131 - 131 aa - 131 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8172+/-0.000354; mu= -3.3670+/- 0.022
 mean_var=220.8679+/-44.408, 0's: 0 Z-trim(122.0): 6  B-trim: 0 in 0/55
 Lambda= 0.086299
 statistics sampled from 39445 (39454) to 39445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.463), width:  16
 Scan time:  5.390

The best scores are:                                      opt bits E(85289)
NP_001070246 (OMIM: 608295) protein FAM107A isofor ( 144)  457 68.0 5.4e-12
NP_009108 (OMIM: 608295) protein FAM107A isoform a ( 144)  457 68.0 5.4e-12
NP_001269642 (OMIM: 608295) protein FAM107A isofor ( 172)  457 68.1 6.2e-12
NP_001269643 (OMIM: 608295) protein FAM107A isofor ( 175)  457 68.1 6.3e-12


>>NP_001070246 (OMIM: 608295) protein FAM107A isoform a   (144 aa)
 initn: 326 init1: 326 opt: 457  Z-score: 336.3  bits: 68.0 E(85289): 5.4e-12
Smith-Waterman score: 457; 54.5% identity (84.1% similar) in 132 aa overlap (1-130:16-143)

                              10        20        30        40     
pF1KE0                MAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRGL
                      ::.:.: :  :::::.:.::.::::.::.::.::::::::..:::
NP_001 MYSEIQRERADIGGLMARPEYREW-NPELIKPKKLLNPVKASRSHQELHRELLMNHRRGL
               10        20         30        40        50         

          50        60        70          80        90       100   
pF1KE0 APQNKPELQKVMEKRKRDQVIKQKEEE--AQKKKSDLEIELLKRQQKLEQLELEKQKLQE
       . ..:::::.:.:.:.:.:.::.:.::  :.. .  .: :::.:::.:.:::   .:   
NP_001 GVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQQRLNQLEKPPEK---
      60        70        80        90       100       110         

           110       120       130 
pF1KE0 EQENAPEFVKVKGNLRRTGQEVAQAQES
       :...::::.::. :::: .  ... .: 
NP_001 EEDHAPEFIKVRENLRRIATLTSEEREL
        120       130       140    

>>NP_009108 (OMIM: 608295) protein FAM107A isoform a [Ho  (144 aa)
 initn: 326 init1: 326 opt: 457  Z-score: 336.3  bits: 68.0 E(85289): 5.4e-12
Smith-Waterman score: 457; 54.5% identity (84.1% similar) in 132 aa overlap (1-130:16-143)

                              10        20        30        40     
pF1KE0                MAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRGL
                      ::.:.: :  :::::.:.::.::::.::.::.::::::::..:::
NP_009 MYSEIQRERADIGGLMARPEYREW-NPELIKPKKLLNPVKASRSHQELHRELLMNHRRGL
               10        20         30        40        50         

          50        60        70          80        90       100   
pF1KE0 APQNKPELQKVMEKRKRDQVIKQKEEE--AQKKKSDLEIELLKRQQKLEQLELEKQKLQE
       . ..:::::.:.:.:.:.:.::.:.::  :.. .  .: :::.:::.:.:::   .:   
NP_009 GVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQQRLNQLEKPPEK---
      60        70        80        90       100       110         

           110       120       130 
pF1KE0 EQENAPEFVKVKGNLRRTGQEVAQAQES
       :...::::.::. :::: .  ... .: 
NP_009 EEDHAPEFIKVRENLRRIATLTSEEREL
        120       130       140    

>>NP_001269642 (OMIM: 608295) protein FAM107A isoform b   (172 aa)
 initn: 326 init1: 326 opt: 457  Z-score: 335.2  bits: 68.1 E(85289): 6.2e-12
Smith-Waterman score: 457; 54.5% identity (84.1% similar) in 132 aa overlap (1-130:44-171)

                                             10        20        30
pF1KE0                               MAEPDYIEDDNPELIRPQKLINPVKTSRNH
                                     ::.:.: :  :::::.:.::.::::.::.:
NP_001 DATGLYRAVLLRSAAMYSEIQRERADIGGLMARPEYREW-NPELIKPKKLLNPVKASRSH
            20        30        40        50         60        70  

               40        50        60        70          80        
pF1KE0 QDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEE--AQKKKSDLEIELLKRQ
       :.::::::::..:::. ..:::::.:.:.:.:.:.::.:.::  :.. .  .: :::.::
NP_001 QELHRELLMNHRRGLGVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQ
             80        90       100       110       120       130  

       90       100       110       120       130 
pF1KE0 QKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES
       :.:.:::   .:   :...::::.::. :::: .  ... .: 
NP_001 QRLNQLEKPPEK---EEDHAPEFIKVRENLRRIATLTSEEREL
            140          150       160       170  

>>NP_001269643 (OMIM: 608295) protein FAM107A isoform c   (175 aa)
 initn: 326 init1: 326 opt: 457  Z-score: 335.1  bits: 68.1 E(85289): 6.3e-12
Smith-Waterman score: 457; 54.5% identity (84.1% similar) in 132 aa overlap (1-130:47-174)

                                             10        20        30
pF1KE0                               MAEPDYIEDDNPELIRPQKLINPVKTSRNH
                                     ::.:.: :  :::::.:.::.::::.::.:
NP_001 FHSENEKQRRNGSAAMYSEIQRERADIGGLMARPEYREW-NPELIKPKKLLNPVKASRSH
         20        30        40        50         60        70     

               40        50        60        70          80        
pF1KE0 QDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEE--AQKKKSDLEIELLKRQ
       :.::::::::..:::. ..:::::.:.:.:.:.:.::.:.::  :.. .  .: :::.::
NP_001 QELHRELLMNHRRGLGVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQ
          80        90       100       110       120       130     

       90       100       110       120       130 
pF1KE0 QKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES
       :.:.:::   .:   :...::::.::. :::: .  ... .: 
NP_001 QRLNQLEKPPEK---EEDHAPEFIKVRENLRRIATLTSEEREL
         140          150       160       170     




131 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:57:07 2016 done: Thu Nov  3 23:57:08 2016
 Total Scan time:  5.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]