Result of FASTA (ccds) for
pF1KE0152
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0152, 131 aa
1>>>pF1KE0152 131 - 131 aa - 131 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0304+/-0.000878; mu= 1.4196+/- 0.053
mean_var=208.3016+/-41.615, 0's: 0 Z-trim(114.3): 8 B-trim: 0 in 0/52
Lambda= 0.088864
statistics sampled from 14844 (14851) to 14844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.456), width: 16
Scan time: 1.730
The best scores are: opt bits E(32554)
CCDS60486.1 FAM107B gene_id:83641|Hs108|chr10 ( 131) 843 118.9 9e-28
CCDS7102.1 FAM107B gene_id:83641|Hs108|chr10 ( 306) 843 119.3 1.6e-27
CCDS2892.1 FAM107A gene_id:11170|Hs108|chr3 ( 144) 457 69.5 7.6e-13
CCDS63672.1 FAM107A gene_id:11170|Hs108|chr3 ( 172) 457 69.5 8.6e-13
CCDS63673.1 FAM107A gene_id:11170|Hs108|chr3 ( 175) 457 69.5 8.7e-13
>>CCDS60486.1 FAM107B gene_id:83641|Hs108|chr10 (131 aa)
initn: 843 init1: 843 opt: 843 Z-score: 612.1 bits: 118.9 E(32554): 9e-28
Smith-Waterman score: 843; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE0 MAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENAPEFVKVKGNLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENAPEFVKVKGNLRR
70 80 90 100 110 120
130
pF1KE0 TGQEVAQAQES
:::::::::::
CCDS60 TGQEVAQAQES
130
>>CCDS7102.1 FAM107B gene_id:83641|Hs108|chr10 (306 aa)
initn: 843 init1: 843 opt: 843 Z-score: 607.4 bits: 119.3 E(32554): 1.6e-27
Smith-Waterman score: 843; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:176-306)
10 20 30
pF1KE0 MAEPDYIEDDNPELIRPQKLINPVKTSRNH
::::::::::::::::::::::::::::::
CCDS71 KCLELEQKMTSDSPPEDIDHKDSYLITRSIMAEPDYIEDDNPELIRPQKLINPVKTSRNH
150 160 170 180 190 200
40 50 60 70 80 90
pF1KE0 QDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELLKRQQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 QDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELLKRQQK
210 220 230 240 250 260
100 110 120 130
pF1KE0 LEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES
:::::::::::::::::::::::::::::::::::::::::
CCDS71 LEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES
270 280 290 300
>>CCDS2892.1 FAM107A gene_id:11170|Hs108|chr3 (144 aa)
initn: 326 init1: 326 opt: 457 Z-score: 344.1 bits: 69.5 E(32554): 7.6e-13
Smith-Waterman score: 457; 54.5% identity (84.1% similar) in 132 aa overlap (1-130:16-143)
10 20 30 40
pF1KE0 MAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRGL
::.:.: : :::::.:.::.::::.::.::.::::::::..:::
CCDS28 MYSEIQRERADIGGLMARPEYREW-NPELIKPKKLLNPVKASRSHQELHRELLMNHRRGL
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 APQNKPELQKVMEKRKRDQVIKQKEEE--AQKKKSDLEIELLKRQQKLEQLELEKQKLQE
. ..:::::.:.:.:.:.:.::.:.:: :.. . .: :::.:::.:.::: .:
CCDS28 GVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQQRLNQLEKPPEK---
60 70 80 90 100 110
110 120 130
pF1KE0 EQENAPEFVKVKGNLRRTGQEVAQAQES
:...::::.::. :::: . ... .:
CCDS28 EEDHAPEFIKVRENLRRIATLTSEEREL
120 130 140
>>CCDS63672.1 FAM107A gene_id:11170|Hs108|chr3 (172 aa)
initn: 326 init1: 326 opt: 457 Z-score: 343.1 bits: 69.5 E(32554): 8.6e-13
Smith-Waterman score: 457; 54.5% identity (84.1% similar) in 132 aa overlap (1-130:44-171)
10 20 30
pF1KE0 MAEPDYIEDDNPELIRPQKLINPVKTSRNH
::.:.: : :::::.:.::.::::.::.:
CCDS63 DATGLYRAVLLRSAAMYSEIQRERADIGGLMARPEYREW-NPELIKPKKLLNPVKASRSH
20 30 40 50 60 70
40 50 60 70 80
pF1KE0 QDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEE--AQKKKSDLEIELLKRQ
:.::::::::..:::. ..:::::.:.:.:.:.:.::.:.:: :.. . .: :::.::
CCDS63 QELHRELLMNHRRGLGVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQ
80 90 100 110 120 130
90 100 110 120 130
pF1KE0 QKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES
:.:.::: .: :...::::.::. :::: . ... .:
CCDS63 QRLNQLEKPPEK---EEDHAPEFIKVRENLRRIATLTSEEREL
140 150 160 170
>>CCDS63673.1 FAM107A gene_id:11170|Hs108|chr3 (175 aa)
initn: 326 init1: 326 opt: 457 Z-score: 343.0 bits: 69.5 E(32554): 8.7e-13
Smith-Waterman score: 457; 54.5% identity (84.1% similar) in 132 aa overlap (1-130:47-174)
10 20 30
pF1KE0 MAEPDYIEDDNPELIRPQKLINPVKTSRNH
::.:.: : :::::.:.::.::::.::.:
CCDS63 FHSENEKQRRNGSAAMYSEIQRERADIGGLMARPEYREW-NPELIKPKKLLNPVKASRSH
20 30 40 50 60 70
40 50 60 70 80
pF1KE0 QDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEE--AQKKKSDLEIELLKRQ
:.::::::::..:::. ..:::::.:.:.:.:.:.::.:.:: :.. . .: :::.::
CCDS63 QELHRELLMNHRRGLGVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQ
80 90 100 110 120 130
90 100 110 120 130
pF1KE0 QKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES
:.:.::: .: :...::::.::. :::: . ... .:
CCDS63 QRLNQLEKPPEK---EEDHAPEFIKVRENLRRIATLTSEEREL
140 150 160 170
131 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:57:07 2016 done: Thu Nov 3 23:57:07 2016
Total Scan time: 1.730 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]