FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0146, 296 aa
  1>>>pF1KE0146 296 - 296 aa - 296 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6723+/-0.000319; mu= 15.3614+/- 0.020
 mean_var=95.5041+/-18.697, 0's: 0 Z-trim(118.0): 11  B-trim: 0 in 0/56
 Lambda= 0.131239
 statistics sampled from 30504 (30515) to 30504 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.358), width:  16
 Scan time:  6.100

The best scores are:                                      opt bits E(85289)
NP_054894 (OMIM: 611828) 39S ribosomal protein L15 ( 296) 2004 389.1 5.3e-108
XP_016868851 (OMIM: 611828) PREDICTED: 39S ribosom ( 185) 1227 241.9 7.3e-64


>>NP_054894 (OMIM: 611828) 39S ribosomal protein L15, mi  (296 aa)
 initn: 2004 init1: 2004 opt: 2004  Z-score: 2059.9  bits: 389.1 E(85289): 5.3e-108
Smith-Waterman score: 2004; 99.3% identity (99.7% similar) in 296 aa overlap (1-296:1-296)

               10        20        30        40        50        60
pF1KE0 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPMSLNRLQYLIDLGRVDPSQPIDLTQ
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
NP_054 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LVNGRGVTIQPLKRDYDVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_054 LVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY
              190       200       210       220       230       240

              250       260       270       280       290      
pF1KE0 GYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 GYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS
              250       260       270       280       290      

>>XP_016868851 (OMIM: 611828) PREDICTED: 39S ribosomal p  (185 aa)
 initn: 1227 init1: 1227 opt: 1227  Z-score: 1267.5  bits: 241.9 E(85289): 7.3e-64
Smith-Waterman score: 1227; 98.9% identity (99.5% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KE0 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPMSLNRLQYLIDLGRVDPSQPIDLTQ
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
XP_016 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LVNGRGVTIQPLKRDYDVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
XP_016 LVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY
       ::::                                                        
XP_016 PRSLG                                                       
                                                                   




296 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:24:47 2016 done: Fri Nov  4 00:24:48 2016
 Total Scan time:  6.100 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]