FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0146, 296 aa
  1>>>pF1KE0146 296 - 296 aa - 296 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4001+/-0.000781; mu= 16.9397+/- 0.047
 mean_var=93.8323+/-18.381, 0's: 0 Z-trim(110.9): 10  B-trim: 0 in 0/52
 Lambda= 0.132403
 statistics sampled from 11946 (11948) to 11946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.367), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS6158.1 MRPL15 gene_id:29088|Hs108|chr8         ( 296) 2004 392.4 2.2e-109


>>CCDS6158.1 MRPL15 gene_id:29088|Hs108|chr8              (296 aa)
 initn: 2004 init1: 2004 opt: 2004  Z-score: 2077.4  bits: 392.4 E(32554): 2.2e-109
Smith-Waterman score: 2004; 99.3% identity (99.7% similar) in 296 aa overlap (1-296:1-296)

               10        20        30        40        50        60
pF1KE0 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPMSLNRLQYLIDLGRVDPSQPIDLTQ
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS61 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LVNGRGVTIQPLKRDYDVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS61 LVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY
              190       200       210       220       230       240

              250       260       270       280       290      
pF1KE0 GYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 GYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS
              250       260       270       280       290      




296 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:24:46 2016 done: Fri Nov  4 00:24:46 2016
 Total Scan time:  2.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]