FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0142, 179 aa
  1>>>pF1KE0142 179 - 179 aa - 179 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6751+/-0.000618; mu= 10.9641+/- 0.037
 mean_var=66.3459+/-13.254, 0's: 0 Z-trim(111.1): 4  B-trim: 6 in 1/49
 Lambda= 0.157459
 statistics sampled from 12107 (12111) to 12107 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.372), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS12668.1 OPA3 gene_id:80207|Hs108|chr19         ( 179) 1182 276.6 5.8e-75
CCDS33052.1 OPA3 gene_id:80207|Hs108|chr19         ( 180)  877 207.3 4.2e-54


>>CCDS12668.1 OPA3 gene_id:80207|Hs108|chr19              (179 aa)
 initn: 1182 init1: 1182 opt: 1182  Z-score: 1459.3  bits: 276.6 E(32554): 5.8e-75
Smith-Waterman score: 1182; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KE0 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWN
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KE0 ALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLCNPGRSASHAVPASKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLCNPGRSASHAVPASKK
              130       140       150       160       170         

>>CCDS33052.1 OPA3 gene_id:80207|Hs108|chr19              (180 aa)
 initn: 865 init1: 865 opt: 877  Z-score: 1084.8  bits: 207.3 E(32554): 4.2e-54
Smith-Waterman score: 877; 77.3% identity (90.1% similar) in 181 aa overlap (1-179:1-180)

               10        20        30        40        50        60
pF1KE0 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRI
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS33 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWLEMRTKMRI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MGFRGTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWN
       ::: ...:::::: ::::::::::::. :::.. .::.::::::: :::.::.:.:.: .
CCDS33 MGFNAAAIKPLNEGAAAELGAELLGEGIIFITACSCLMLEYWRHQLQQRRKEKERRVARE
               70        80        90       100       110       120

              130       140       150       160         170        
pF1KE0 ALRDEVGHLALALEALQAQVQAAPPQGALEELRTELQEVRAQLC--NPGRSASHAVPASK
       ::: :::::.:::: :::::::.  : ::::::..::::::.::  .:   :  ..:::.
CCDS33 ALRGEVGHLGLALEELQAQVQATSTQLALEELRAQLQEVRAHLCLRDPP-PAPPVAPASE
              130       140       150       160        170         

        
pF1KE0 K
       :
CCDS33 K
     180




179 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:40:33 2016 done: Fri Nov  4 00:40:33 2016
 Total Scan time:  1.980 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]