FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0141, 224 aa
  1>>>pF1KE0141 224 - 224 aa - 224 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3347+/-0.000355; mu= 13.9069+/- 0.022
 mean_var=64.7121+/-12.974, 0's: 0 Z-trim(114.2): 11  B-trim: 0 in 0/51
 Lambda= 0.159434
 statistics sampled from 23842 (23847) to 23842 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.28), width:  16
 Scan time:  5.500

The best scores are:                                      opt bits E(85289)
NP_112485 (OMIM: 616320) acylpyruvase FAHD1, mitoc ( 224) 1510 355.8 3.4e-98
NP_001018114 (OMIM: 616320) acylpyruvase FAHD1, mi ( 248) 1434 338.3 6.8e-93
NP_001135870 (OMIM: 616320) acylpyruvase FAHD1, mi ( 226) 1433 338.1 7.4e-93


>>NP_112485 (OMIM: 616320) acylpyruvase FAHD1, mitochond  (224 aa)
 initn: 1510 init1: 1510 opt: 1510  Z-score: 1883.8  bits: 355.8 E(85289): 3.4e-98
Smith-Waterman score: 1510; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KE0 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
              130       140       150       160       170       180

              190       200       210       220    
pF1KE0 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY
       ::::::::::::::::::::::::::::::::::::::::::::
NP_112 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY
              190       200       210       220    

>>NP_001018114 (OMIM: 616320) acylpyruvase FAHD1, mitoch  (248 aa)
 initn: 1433 init1: 1433 opt: 1434  Z-score: 1788.7  bits: 338.3 E(85289): 6.8e-93
Smith-Waterman score: 1434; 96.0% identity (98.2% similar) in 223 aa overlap (1-220:1-223)

               10        20        30        40        50        60
pF1KE0 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
              130       140       150       160       170       180

              190       200       210          220                 
pF1KE0 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGL---VSMTFKVEKPEY             
       ::::::::::::::::::::::::::::::::   .... :.:                 
NP_001 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLRQGLTLSPKLECSSAITAHCSLELPGSS
              190       200       210       220       230       240

NP_001 NPPSASRF
               

>>NP_001135870 (OMIM: 616320) acylpyruvase FAHD1, mitoch  (226 aa)
 initn: 1433 init1: 1433 opt: 1433  Z-score: 1788.1  bits: 338.1 E(85289): 7.4e-93
Smith-Waterman score: 1433; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE0 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
              130       140       150       160       170       180

              190       200       210       220      
pF1KE0 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY  
       ::::::::::::::::::::::::::::::::              
NP_001 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLPKVSSATLPVRLQE
              190       200       210       220      




224 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:42:13 2016 done: Fri Nov  4 00:42:14 2016
 Total Scan time:  5.500 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]