FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0141, 224 aa
  1>>>pF1KE0141 224 - 224 aa - 224 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5266+/-0.000755; mu= 12.5428+/- 0.045
 mean_var=62.3998+/-12.482, 0's: 0 Z-trim(107.7): 13  B-trim: 0 in 0/51
 Lambda= 0.162361
 statistics sampled from 9728 (9734) to 9728 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.299), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS10448.1 FAHD1 gene_id:81889|Hs108|chr16        ( 224) 1510 361.9 1.8e-100
CCDS32367.1 FAHD1 gene_id:81889|Hs108|chr16        ( 248) 1434 344.2 4.5e-95
CCDS45380.1 FAHD1 gene_id:81889|Hs108|chr16        ( 226) 1433 343.9 4.9e-95
CCDS2014.1 FAHD2A gene_id:51011|Hs108|chr2         ( 314)  491 123.3 1.7e-28
CCDS2030.1 FAHD2B gene_id:151313|Hs108|chr2        ( 314)  487 122.4 3.3e-28


>>CCDS10448.1 FAHD1 gene_id:81889|Hs108|chr16             (224 aa)
 initn: 1510 init1: 1510 opt: 1510  Z-score: 1917.2  bits: 361.9 E(32554): 1.8e-100
Smith-Waterman score: 1510; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KE0 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
              130       140       150       160       170       180

              190       200       210       220    
pF1KE0 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY
              190       200       210       220    

>>CCDS32367.1 FAHD1 gene_id:81889|Hs108|chr16             (248 aa)
 initn: 1433 init1: 1433 opt: 1434  Z-score: 1820.3  bits: 344.2 E(32554): 4.5e-95
Smith-Waterman score: 1434; 96.0% identity (98.2% similar) in 223 aa overlap (1-220:1-223)

               10        20        30        40        50        60
pF1KE0 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
              130       140       150       160       170       180

              190       200       210          220                 
pF1KE0 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGL---VSMTFKVEKPEY             
       ::::::::::::::::::::::::::::::::   .... :.:                 
CCDS32 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLRQGLTLSPKLECSSAITAHCSLELPGSS
              190       200       210       220       230       240

CCDS32 NPPSASRF
               

>>CCDS45380.1 FAHD1 gene_id:81889|Hs108|chr16             (226 aa)
 initn: 1433 init1: 1433 opt: 1433  Z-score: 1819.7  bits: 343.9 E(32554): 4.9e-95
Smith-Waterman score: 1433; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE0 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
              130       140       150       160       170       180

              190       200       210       220      
pF1KE0 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY  
       ::::::::::::::::::::::::::::::::              
CCDS45 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLPKVSSATLPVRLQE
              190       200       210       220      

>>CCDS2014.1 FAHD2A gene_id:51011|Hs108|chr2              (314 aa)
 initn: 423 init1: 223 opt: 491  Z-score: 624.9  bits: 123.3 E(32554): 1.7e-28
Smith-Waterman score: 491; 38.0% identity (70.7% similar) in 208 aa overlap (20-219:108-313)

                          10        20        30        40         
pF1KE0            MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPS
                                     .:::: ::.:: .:.   : .::..: : .
CCDS20 SVARRALAAQLPVLPRSEVTFLAPVTRPDKVVCVGMNYVDHCKEQNVPVPKEPIIFSKFA
        80        90       100       110       120       130       

      50        60        70        80        90       100         
pF1KE0 TAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQ
       .. .   . ...:  ....  :.::.::.::. . .  . :: .:.:...  :..::: :
CCDS20 SSIVGPYDEVVLPPQSQEVDWEVELAVVIGKKGKHIKATDAMAHVAGFTVAHDVSARDWQ
       140       150       160       170       180       190       

     110       120       130        140       150       160        
pF1KE0 DECKKKGLPWTLAKSFTASCPVS-AFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFS
          ...:  : :.:.: . ::.. :.: :... :::.::.  .::::. : :.:..:.:.
CCDS20 --MRRNGKQWLLGKTFDTFCPLGPALVTKDSVADPHNLKICCRVNGEVVQSGNTNQMVFK
         200       210       220       230       240       250     

      170       180       190              200       210       220 
pF1KE0 IPYIISYVSKIITLEEGDIILTGTPKGVG-----PV--KENDEIEAGIHGLVSMTFKVEK
          .:..::...:.  ::.:::::: :::     ::  :..::..  :. :  .  ::  
CCDS20 TEDLIAWVSQFVTFYPGDVILTGTPPGVGVFRKPPVFLKKGDEVQCEIEELGVIINKVV 
         260       270       280       290       300       310     

          
pF1KE0 PEY

>>CCDS2030.1 FAHD2B gene_id:151313|Hs108|chr2             (314 aa)
 initn: 427 init1: 226 opt: 487  Z-score: 619.8  bits: 122.4 E(32554): 3.3e-28
Smith-Waterman score: 487; 36.8% identity (69.8% similar) in 212 aa overlap (16-219:104-313)

                              10        20        30        40     
pF1KE0                MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLF
                                     :  ..:::: ::.:: .:.   : .::..:
CCDS20 EATLSVARRALAAQLPVLPWSEVTFLAPVTWPDKVVCVGMNYVDHCKEQNVPVPKEPIIF
            80        90       100       110       120       130   

          50        60        70        80        90       100     
pF1KE0 LKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTA
        : ... .   . ...:  ....  :.::.::.::. . .  . :: .:.:...  :..:
CCDS20 SKFASSIVGPYDEVVLPPQSQEVDWEVELAVVIGKKGKHIKATDAMAHVAGFTVAHDVSA
           140       150       160       170       180       190   

         110       120       130        140       150       160    
pF1KE0 RDVQDECKKKGLPWTLAKSFTASCPVS-AFVPKEKIPDPHKLKLWLKVNGELRQEGETSS
       ::     ...:  : :.:.: . ::.. :.: :... :::.::.  .::::. : ..:..
CCDS20 RDWLT--RRNGKQWLLGKTFDTFCPLGPALVTKDSVADPHNLKICCRVNGEVVQSSNTNQ
             200       210       220       230       240       250 

          170       180       190              200       210       
pF1KE0 MIFSIPYIISYVSKIITLEEGDIILTGTPKGVG-----PV--KENDEIEAGIHGLVSMTF
       :.:.   .:..::...:.  ::.:::::: :::     ::  :..::..  :. :  .  
CCDS20 MVFKTEDLIAWVSQFVTFYPGDVILTGTPPGVGVFRKPPVFLKKGDEVQCEIEELGVIIN
             260       270       280       290       300       310 

       220    
pF1KE0 KVEKPEY
       ::     
CCDS20 KVV    
              




224 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:42:12 2016 done: Fri Nov  4 00:42:13 2016
 Total Scan time:  1.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]