FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0140, 285 aa
  1>>>pF1KE0140 285 - 285 aa - 285 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5776+/-0.0003; mu= 19.9088+/- 0.019
 mean_var=69.0304+/-14.150, 0's: 0 Z-trim(118.2): 8  B-trim: 2594 in 2/55
 Lambda= 0.154367
 statistics sampled from 30830 (30838) to 30830 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.362), width:  16
 Scan time:  6.770

The best scores are:                                      opt bits E(85289)
NP_057673 (OMIM: 615534) complex I assembly factor ( 285) 1910 433.8 1.8e-121
XP_016862045 (OMIM: 615534) PREDICTED: complex I a ( 151)  562 133.3 2.7e-31


>>NP_057673 (OMIM: 615534) complex I assembly factor TIM  (285 aa)
 initn: 1910 init1: 1910 opt: 1910  Z-score: 2301.7  bits: 433.8 E(85289): 1.8e-121
Smith-Waterman score: 1910; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)

               10        20        30        40        50        60
pF1KE0 MEVPPPAPRSFLCRALCLFPRVFAAEAVTADSEVLEERQKRLPYVPEPYYPESGWDRLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MEVPPPAPRSFLCRALCLFPRVFAAEAVTADSEVLEERQKRLPYVPEPYYPESGWDRLRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LFGKDEQQRISKDLANICKTAATAGIIGWVYGGIPAFIHAKQQYIEQSQAEIYHNRFDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LFGKDEQQRISKDLANICKTAATAGIIGWVYGGIPAFIHAKQQYIEQSQAEIYHNRFDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QSAHRAATRGFIRYGWRWGWRTAVFVTIFNTVNTSLNVYRNKDALSHFVIAGAVTGSLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QSAHRAATRGFIRYGWRWGWRTAVFVTIFNTVNTSLNVYRNKDALSHFVIAGAVTGSLFR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 INVGLRGLVAGGIIGALLGTPVGGLLMAFQKYSGETVQERKQKDRKALHELKLEEWKGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 INVGLRGLVAGGIIGALLGTPVGGLLMAFQKYSGETVQERKQKDRKALHELKLEEWKGRL
              190       200       210       220       230       240

              250       260       270       280     
pF1KE0 QVTEHLPEKIESSLQEDEPENDAKKIEALLNLPRNPSVIDKQDKD
       :::::::::::::::::::::::::::::::::::::::::::::
NP_057 QVTEHLPEKIESSLQEDEPENDAKKIEALLNLPRNPSVIDKQDKD
              250       260       270       280     

>>XP_016862045 (OMIM: 615534) PREDICTED: complex I assem  (151 aa)
 initn: 1008 init1: 562 opt: 562  Z-score: 682.7  bits: 133.3 E(85289): 2.7e-31
Smith-Waterman score: 744; 53.0% identity (53.0% similar) in 285 aa overlap (1-285:1-151)

               10        20        30        40        50        60
pF1KE0 MEVPPPAPRSFLCRALCLFPRVFAAEAVTADSEVLEERQKRLPYVPEPYYPESGWDRLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEVPPPAPRSFLCRALCLFPRVFAAEAVTADSEVLEERQKRLPYVPEPYYPESGWDRLRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LFGKDEQQRISKDLANICKTAATAGIIGWVYGGIPAFIHAKQQYIEQSQAEIYHNRFDAV
       :::::                                                       
XP_016 LFGKD-------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KE0 QSAHRAATRGFIRYGWRWGWRTAVFVTIFNTVNTSLNVYRNKDALSHFVIAGAVTGSLFR
                                                                   
XP_016 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KE0 INVGLRGLVAGGIIGALLGTPVGGLLMAFQKYSGETVQERKQKDRKALHELKLEEWKGRL
                          :::::::::::::::::::::::::::::::::::::::::
XP_016 -------------------TPVGGLLMAFQKYSGETVQERKQKDRKALHELKLEEWKGRL
                             70        80        90       100      

              250       260       270       280     
pF1KE0 QVTEHLPEKIESSLQEDEPENDAKKIEALLNLPRNPSVIDKQDKD
       :::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVTEHLPEKIESSLQEDEPENDAKKIEALLNLPRNPSVIDKQDKD
        110       120       130       140       150 




285 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:46:55 2016 done: Fri Nov  4 00:46:56 2016
 Total Scan time:  6.770 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]