FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0140, 285 aa
  1>>>pF1KE0140 285 - 285 aa - 285 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5980+/-0.000667; mu= 19.6447+/- 0.040
 mean_var=67.5660+/-13.295, 0's: 0 Z-trim(111.0): 12  B-trim: 10 in 1/50
 Lambda= 0.156031
 statistics sampled from 12014 (12018) to 12014 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.369), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS33831.1 TIMMDC1 gene_id:51300|Hs108|chr3       ( 285) 1910 438.3 3.1e-123


>>CCDS33831.1 TIMMDC1 gene_id:51300|Hs108|chr3            (285 aa)
 initn: 1910 init1: 1910 opt: 1910  Z-score: 2325.9  bits: 438.3 E(32554): 3.1e-123
Smith-Waterman score: 1910; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)

               10        20        30        40        50        60
pF1KE0 MEVPPPAPRSFLCRALCLFPRVFAAEAVTADSEVLEERQKRLPYVPEPYYPESGWDRLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MEVPPPAPRSFLCRALCLFPRVFAAEAVTADSEVLEERQKRLPYVPEPYYPESGWDRLRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LFGKDEQQRISKDLANICKTAATAGIIGWVYGGIPAFIHAKQQYIEQSQAEIYHNRFDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LFGKDEQQRISKDLANICKTAATAGIIGWVYGGIPAFIHAKQQYIEQSQAEIYHNRFDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QSAHRAATRGFIRYGWRWGWRTAVFVTIFNTVNTSLNVYRNKDALSHFVIAGAVTGSLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QSAHRAATRGFIRYGWRWGWRTAVFVTIFNTVNTSLNVYRNKDALSHFVIAGAVTGSLFR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 INVGLRGLVAGGIIGALLGTPVGGLLMAFQKYSGETVQERKQKDRKALHELKLEEWKGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 INVGLRGLVAGGIIGALLGTPVGGLLMAFQKYSGETVQERKQKDRKALHELKLEEWKGRL
              190       200       210       220       230       240

              250       260       270       280     
pF1KE0 QVTEHLPEKIESSLQEDEPENDAKKIEALLNLPRNPSVIDKQDKD
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QVTEHLPEKIESSLQEDEPENDAKKIEALLNLPRNPSVIDKQDKD
              250       260       270       280     




285 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:46:54 2016 done: Fri Nov  4 00:46:55 2016
 Total Scan time:  2.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]