FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0139, 180 aa
  1>>>pF1KE0139 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1289+/-0.000674; mu= 13.6567+/- 0.041
 mean_var=58.0179+/-11.643, 0's: 0 Z-trim(109.3): 2  B-trim: 0 in 0/52
 Lambda= 0.168381
 statistics sampled from 10770 (10771) to 10770 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.331), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS5270.1 MRPL18 gene_id:29074|Hs108|chr6         ( 180) 1216 303.0 6.4e-83


>>CCDS5270.1 MRPL18 gene_id:29074|Hs108|chr6              (180 aa)
 initn: 1216 init1: 1216 opt: 1216  Z-score: 1602.2  bits: 303.0 E(32554): 6.4e-83
Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE0 MALRSRFWGLFSVCRNPGCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MALRSRFWGLFSVCRNPGCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQRIYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 NVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQRIYE
              130       140       150       160       170       180




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:53:15 2016 done: Fri Nov  4 00:53:15 2016
 Total Scan time:  1.970 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]