Result of FASTA (ccds) for
pF1KE0129
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0129, 248 aa
1>>>pF1KE0129 248 - 248 aa - 248 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4522+/-0.000698; mu= 14.5057+/- 0.042
mean_var=67.2722+/-13.575, 0's: 0 Z-trim(110.4): 14 B-trim: 297 in 1/49
Lambda= 0.156371
statistics sampled from 11582 (11595) to 11582 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.356), width: 16
Scan time: 2.350
The best scores are: opt bits E(32554)
CCDS76054.1 FAM58A gene_id:92002|Hs108|chrX ( 228) 1525 352.2 1.8e-97
CCDS45160.1 CCNK gene_id:8812|Hs108|chr14 ( 580) 344 86.0 6.2e-17
CCDS77847.1 CCNL1 gene_id:57018|Hs108|chr3 ( 428) 326 81.8 8e-16
CCDS3178.1 CCNL1 gene_id:57018|Hs108|chr3 ( 526) 326 81.9 9.5e-16
CCDS30557.1 CCNL2 gene_id:81669|Hs108|chr1 ( 520) 320 80.5 2.4e-15
CCDS2175.1 CCNT2 gene_id:905|Hs108|chr2 ( 663) 294 74.7 1.7e-13
CCDS2174.1 CCNT2 gene_id:905|Hs108|chr2 ( 730) 294 74.7 1.9e-13
>>CCDS76054.1 FAM58A gene_id:92002|Hs108|chrX (228 aa)
initn: 1560 init1: 1520 opt: 1525 Z-score: 1863.6 bits: 352.2 E(32554): 1.8e-97
Smith-Waterman score: 1525; 96.9% identity (98.2% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KE0 MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQVFNDDLTKPIIDNIVSDLIQI
:::::::::::::::::::::::::::::::::::::::... : :
CCDS76 ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQIYTMDTEIP
190 200 210 220
pF1KE0 YTMDTEIP
>>CCDS45160.1 CCNK gene_id:8812|Hs108|chr14 (580 aa)
initn: 307 init1: 176 opt: 344 Z-score: 417.5 bits: 86.0 E(32554): 6.2e-17
Smith-Waterman score: 345; 28.1% identity (64.3% similar) in 235 aa overlap (17-242:39-259)
10 20 30 40
pF1KE0 MEAPEGGGGGPAARGPEG-QPAPEARVHFRVARFIMEAGVKLGMRS
:: .:: ::: . . ::::...:..::..
CCDS45 SPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHY
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 IPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSG
.::. .:.:. .. . :. . ..::::::: . .:::... .:
CCDS45 DTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLN---
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 EPLELDSRFWELRDS----IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSW
: .: .. :. .. : ..:....:... .::...::.: .:.. ....
CCDS45 -----DVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKG--DKNKI
130 140 150 160 170
170 180 190 200 210
pF1KE0 QRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKP----W
:. .. ::... :: .: :... . :::::.::: .. :. . . :: :
CCDS45 QK--LVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEI--QEWTSKPMYRRW
180 190 200 210 220 230
220 230 240
pF1KE0 WQVFNDDLTKPIIDNIVSDLIQIYTMDTEIP
:. : .:. ....: .....:.
CCDS45 WEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHTPHQLQQPPSLQPTPQVPQVQQSQPS
240 250 260 270 280 290
>>CCDS77847.1 CCNL1 gene_id:57018|Hs108|chr3 (428 aa)
initn: 320 init1: 145 opt: 326 Z-score: 397.6 bits: 81.8 E(32554): 8e-16
Smith-Waterman score: 326; 28.9% identity (59.0% similar) in 239 aa overlap (11-242:66-290)
10 20 30
pF1KE0 MEAPEGGGGGPAARGPEGQPAPEARVHFRV--ARFIMEAG
:. .: : ... .:. ..:. ::
CCDS77 TTGGILIGDRLYSEVSLTIDHSLIPEERLSPTPSMQDGLDLP-SETDLRILGCELIQAAG
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 VKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSN
. : . .. .::. ...:.:: .. .. ..::. : ::.:.:: : ::.::: .
CCDS77 ILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFH
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE0 RYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQN
. . :. :: ::. . . ...... : .:. : : : .:::: .. :: :.
CCDS77 HLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLEC
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE0 WLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAE
:. : ::: . :: . . .::: . :: : .::: .. . .:.
CCDS77 ERNQTLVQ------TAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPT-----
220 230 240 250 260
220 230 240
pF1KE0 KP-WWQVFNDDLTKPIIDNIVSDLIQIYTMDTEIP
.: :. .:. :. :..: . ...::
CCDS77 RPHWFLLFG--TTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLN
270 280 290 300 310 320
>>CCDS3178.1 CCNL1 gene_id:57018|Hs108|chr3 (526 aa)
initn: 320 init1: 145 opt: 326 Z-score: 396.2 bits: 81.9 E(32554): 9.5e-16
Smith-Waterman score: 326; 28.9% identity (59.0% similar) in 239 aa overlap (11-242:66-290)
10 20 30
pF1KE0 MEAPEGGGGGPAARGPEGQPAPEARVHFRV--ARFIMEAG
:. .: : ... .:. ..:. ::
CCDS31 TTGGILIGDRLYSEVSLTIDHSLIPEERLSPTPSMQDGLDLP-SETDLRILGCELIQAAG
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 VKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSN
. : . .. .::. ...:.:: .. .. ..::. : ::.:.:: : ::.::: .
CCDS31 ILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFH
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE0 RYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQN
. . :. :: ::. . . ...... : .:. : : : .:::: .. :: :.
CCDS31 HLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLEC
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE0 WLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAE
:. : ::: . :: . . .::: . :: : .::: .. . .:.
CCDS31 ERNQTLVQ------TAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPT-----
220 230 240 250 260
220 230 240
pF1KE0 KP-WWQVFNDDLTKPIIDNIVSDLIQIYTMDTEIP
.: :. .:. :. :..: . ...::
CCDS31 RPHWFLLFG--TTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLN
270 280 290 300 310 320
>>CCDS30557.1 CCNL2 gene_id:81669|Hs108|chr1 (520 aa)
initn: 340 init1: 131 opt: 320 Z-score: 388.9 bits: 80.5 E(32554): 2.4e-15
Smith-Waterman score: 320; 29.9% identity (60.3% similar) in 214 aa overlap (33-241:84-284)
10 20 30 40 50 60
pF1KE0 APEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCET
.:. ::. : . .. .::. .....::
CCDS30 LPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTK
60 70 80 90 100 110
70 80 90 100 110
pF1KE0 NLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGE----PLELDSRFWELR
.. .. ..:. ..::.:.:: : ::.::: .: . . :: ::. . .:.
CCDS30 SFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLK
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE0 DSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSY
..:.. : .:. : : : .:::: .. :: :. :.: : :.: . ::
CCDS30 NQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQ------TSWNYMNDSL
180 190 200 210 220
180 190 200 210 220 230
pF1KE0 HGALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKP-WWQVFNDDLTKPIIDNIVSDL
. . .::: . :: : .::: .. . .: ..: :. .:. :. :..: .
CCDS30 RTDVFVRFQPESIACACIYLAARTLEIPLP-----NRPHWFLLFGA--TEEEIQEICLKI
230 240 250 260 270 280
240
pF1KE0 IQIYTMDTEIP
.:.:
CCDS30 LQLYARKKVDLTHLEGEVEKRKHAIEEAKAQARGLLPGGTQVLDGTSGFSPAPKLVESPK
290 300 310 320 330 340
>>CCDS2175.1 CCNT2 gene_id:905|Hs108|chr2 (663 aa)
initn: 256 init1: 120 opt: 294 Z-score: 355.6 bits: 74.7 E(32554): 1.7e-13
Smith-Waterman score: 294; 26.4% identity (64.4% similar) in 216 aa overlap (29-240:39-243)
10 20 30 40 50
pF1KE0 MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKF
..: .:.: : .:.. .. : :: . .:.:
CCDS21 SRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 FCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSR---FW
. . .. .. .:. ....::.::::: . . .:.:.. ..: ::: ::.. .
CCDS21 YMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPL-EPL-LDTKCDAYL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 ELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLR
. . .: : .::..: :.....::: ... . : : : .: :.. .
CCDS21 QQTQELVILETIMLQTLGFEITIEHPHTDVVKC-----TQLVRAS---KDLAQTSYFMAT
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 DSYH-GALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQVFNDDLTKPIIDNIV
.: : ..::... :: . ..:: . . :.:. ... : ::. . .: ..:...
CCDS21 NSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDG-KHWWEYVDPTVTLELLDELT
180 190 200 210 220 230
240
pF1KE0 SDLIQIYTMDTEIP
...::
CCDS21 HEFLQILEKTPNRLKKIRNWRANQAARKPKVDGQVSETPLLGSSLVQNSILVDSVTGVPT
240 250 260 270 280 290
>>CCDS2174.1 CCNT2 gene_id:905|Hs108|chr2 (730 aa)
initn: 256 init1: 120 opt: 294 Z-score: 355.0 bits: 74.7 E(32554): 1.9e-13
Smith-Waterman score: 294; 26.4% identity (64.4% similar) in 216 aa overlap (29-240:39-243)
10 20 30 40 50
pF1KE0 MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKF
..: .:.: : .:.. .. : :: . .:.:
CCDS21 SRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 FCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSR---FW
. . .. .. .:. ....::.::::: . . .:.:.. ..: ::: ::.. .
CCDS21 YMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPL-EPL-LDTKCDAYL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 ELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLR
. . .: : .::..: :.....::: ... . : : : .: :.. .
CCDS21 QQTQELVILETIMLQTLGFEITIEHPHTDVVKC-----TQLVRAS---KDLAQTSYFMAT
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 DSYH-GALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQVFNDDLTKPIIDNIV
.: : ..::... :: . ..:: . . :.:. ... : ::. . .: ..:...
CCDS21 NSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDG-KHWWEYVDPTVTLELLDELT
180 190 200 210 220 230
240
pF1KE0 SDLIQIYTMDTEIP
...::
CCDS21 HEFLQILEKTPNRLKKIRNWRANQAARKPKVDGQVSETPLLGSSLVQNSILVDSVTGVPT
240 250 260 270 280 290
248 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:47:32 2016 done: Fri Nov 4 01:47:33 2016
Total Scan time: 2.350 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]