Result of FASTA (ccds) for
pF1KE0126
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0126, 125 aa
1>>>pF1KE0126 125 - 125 aa - 125 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2047+/-0.000755; mu= 10.6147+/- 0.046
mean_var=54.2482+/-10.828, 0's: 0 Z-trim(106.3): 20 B-trim: 0 in 0/52
Lambda= 0.174133
statistics sampled from 8896 (8905) to 8896 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.274), width: 16
Scan time: 1.310
The best scores are: opt bits E(32554)
CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 ( 125) 802 209.1 5.6e-55
CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 ( 125) 791 206.4 3.8e-54
CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 121) 669 175.7 6.3e-45
CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 125) 599 158.1 1.3e-39
CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 ( 147) 443 119.0 9.2e-28
CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 ( 117) 307 84.8 1.4e-17
CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 ( 117) 255 71.7 1.2e-13
CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 ( 117) 247 69.7 5e-13
>>CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 (125 aa)
initn: 802 init1: 802 opt: 802 Z-score: 1100.5 bits: 209.1 E(32554): 5.6e-55
Smith-Waterman score: 802; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)
10 20 30 40 50 60
pF1KE0 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
70 80 90 100 110 120
pF1KE0 MKLSV
:::::
CCDS10 MKLSV
>>CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 (125 aa)
initn: 791 init1: 791 opt: 791 Z-score: 1085.5 bits: 206.4 E(32554): 3.8e-54
Smith-Waterman score: 791; 99.2% identity (99.2% similar) in 125 aa overlap (1-125:1-125)
10 20 30 40 50 60
pF1KE0 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS41 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG
70 80 90 100 110 120
pF1KE0 MKLSV
:::::
CCDS41 MKLSV
>>CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 (121 aa)
initn: 669 init1: 669 opt: 669 Z-score: 920.1 bits: 175.7 E(32554): 6.3e-45
Smith-Waterman score: 669; 82.5% identity (95.0% similar) in 120 aa overlap (1-120:1-120)
10 20 30 40 50 60
pF1KE0 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
:::.. :::::.: .: ..:. ::.:::.:::::::::::::::::::::::::::::::
CCDS13 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
:::.:::::::::: .:::::::: ::::::::::...::.:::::::::::::::::::
CCDS13 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
70 80 90 100 110 120
pF1KE0 MKLSV
CCDS13 F
>>CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 (125 aa)
initn: 599 init1: 599 opt: 599 Z-score: 824.8 bits: 158.1 E(32554): 1.3e-39
Smith-Waterman score: 599; 85.7% identity (96.2% similar) in 105 aa overlap (16-120:20-124)
10 20 30 40 50
pF1KE0 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD
: ..:. ::.:::.:::::::::::::::::::::::::::
CCDS13 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 HVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQ
:::::::.:::::::::: .:::::::: ::::::::::...::.:::::::::::::::
CCDS13 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ
70 80 90 100 110 120
120
pF1KE0 ETFGMKLSV
::::
CCDS13 ETFGF
>>CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 (147 aa)
initn: 443 init1: 443 opt: 443 Z-score: 611.9 bits: 119.0 E(32554): 9.2e-28
Smith-Waterman score: 443; 55.0% identity (84.2% similar) in 120 aa overlap (1-120:7-126)
10 20 30 40 50
pF1KE0 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLV
.:: . ::::... : :.: :: . :.::::..::: : :: ::::::::
CCDS31 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 PDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA
:....:.....::: :. : :..::.::::..:.::.:. ..:.:.. ::::::.::.::
CCDS31 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
70 80 90 100 110 120
120
pF1KE0 SQETFGMKLSV
::::::
CCDS31 SQETFGCLESAAPRDGSSLEDRPCNPL
130 140
>>CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 (117 aa)
initn: 303 init1: 118 opt: 307 Z-score: 428.9 bits: 84.8 E(32554): 1.4e-17
Smith-Waterman score: 307; 39.5% identity (81.6% similar) in 114 aa overlap (7-120:5-116)
10 20 30 40 50 60
pF1KE0 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
::. ...:.: . :: ..: ..:::.:. .: .:. .:: :.:::. ...
CCDS10 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSG-SQIVDIDKRKYLVPSDITV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
.... :::.:.:: ...:.::.:. ... . : ....::.:::::::::..:....:::
CCDS10 AQFMWIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG
60 70 80 90 100 110
pF1KE0 MKLSV
CCDS10 F
>>CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 (117 aa)
initn: 244 init1: 113 opt: 255 Z-score: 358.3 bits: 71.7 E(32554): 1.2e-13
Smith-Waterman score: 255; 32.5% identity (78.9% similar) in 114 aa overlap (7-120:5-116)
10 20 30 40 50 60
pF1KE0 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
.:. . :: : .. . ::...: ..:::.:. . ..: ::: :.:::. ...
CCDS86 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
... .::.:..: ..:.:..:: ... .:. ....::....:: :::..:... ..:
CCDS86 GQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
60 70 80 90 100 110
pF1KE0 MKLSV
CCDS86 K
>>CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 (117 aa)
initn: 232 init1: 111 opt: 247 Z-score: 347.4 bits: 69.7 E(32554): 5e-13
Smith-Waterman score: 247; 31.3% identity (78.3% similar) in 115 aa overlap (7-121:5-117)
10 20 30 40 50 60
pF1KE0 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
.:... ::.: . . ::...: ..:::.:. . .. ::: :.:::. ...
CCDS11 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
... .::.:..: :..:.:..:: . . .:. ....:. ...:: :::..:... ..:
CCDS11 GQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG
60 70 80 90 100 110
pF1KE0 MKLSV
.
CCDS11 L
125 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:55:31 2016 done: Fri Nov 4 01:55:31 2016
Total Scan time: 1.310 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]