Result of FASTA (omim) for
pF1KE0125
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0125, 121 aa
1>>>pF1KE0125 121 - 121 aa - 121 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2112+/-0.000311; mu= 10.8843+/- 0.019
mean_var=58.0640+/-11.676, 0's: 0 Z-trim(115.8): 25 B-trim: 86 in 1/51
Lambda= 0.168314
statistics sampled from 26427 (26452) to 26427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.31), width: 16
Scan time: 4.170
The best scores are: opt bits E(85289)
NP_115903 (OMIM: 601242) microtubule-associated pr ( 121) 806 203.4 7.5e-53
XP_011527387 (OMIM: 601242) PREDICTED: microtubule ( 182) 806 203.4 1.1e-52
XP_011527386 (OMIM: 601242) PREDICTED: microtubule ( 223) 806 203.5 1.3e-52
XP_011527385 (OMIM: 601242) PREDICTED: microtubule ( 223) 806 203.5 1.3e-52
NP_852610 (OMIM: 601242) microtubule-associated pr ( 125) 711 180.3 6.8e-46
NP_073729 (OMIM: 609604) microtubule-associated pr ( 125) 669 170.1 8e-43
XP_005273196 (OMIM: 609605) PREDICTED: microtubule ( 147) 466 120.8 6.4e-28
NP_001004343 (OMIM: 609605) microtubule-associated ( 147) 466 120.8 6.4e-28
NP_009216 (OMIM: 607452) gamma-aminobutyric acid r ( 117) 332 88.3 3.3e-18
NP_113600 (OMIM: 607420) gamma-aminobutyric acid r ( 117) 270 73.2 1.1e-13
NP_009209 (OMIM: 605125) gamma-aminobutyric acid r ( 117) 240 65.9 1.7e-11
XP_005253401 (OMIM: 607420) PREDICTED: gamma-amino ( 146) 213 59.4 2e-09
>>NP_115903 (OMIM: 601242) microtubule-associated protei (121 aa)
initn: 806 init1: 806 opt: 806 Z-score: 1069.8 bits: 203.4 E(85289): 7.5e-53
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
70 80 90 100 110 120
pF1KE0 F
:
NP_115 F
>>XP_011527387 (OMIM: 601242) PREDICTED: microtubule-ass (182 aa)
initn: 806 init1: 806 opt: 806 Z-score: 1067.0 bits: 203.4 E(85289): 1.1e-52
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:62-182)
10 20 30
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSK
::::::::::::::::::::::::::::::
XP_011 REARSPRSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSK
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVS
100 110 120 130 140 150
100 110 120
pF1KE0 VSTPIADIYEQEKDEDGFLYMVYASQETFGF
:::::::::::::::::::::::::::::::
XP_011 VSTPIADIYEQEKDEDGFLYMVYASQETFGF
160 170 180
>>XP_011527386 (OMIM: 601242) PREDICTED: microtubule-ass (223 aa)
initn: 806 init1: 806 opt: 806 Z-score: 1065.6 bits: 203.5 E(85289): 1.3e-52
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:103-223)
10 20 30
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSK
::::::::::::::::::::::::::::::
XP_011 REARSPRSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSK
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE0 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVS
140 150 160 170 180 190
100 110 120
pF1KE0 VSTPIADIYEQEKDEDGFLYMVYASQETFGF
:::::::::::::::::::::::::::::::
XP_011 VSTPIADIYEQEKDEDGFLYMVYASQETFGF
200 210 220
>>XP_011527385 (OMIM: 601242) PREDICTED: microtubule-ass (223 aa)
initn: 806 init1: 806 opt: 806 Z-score: 1065.6 bits: 203.5 E(85289): 1.3e-52
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:103-223)
10 20 30
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSK
::::::::::::::::::::::::::::::
XP_011 REARSPRSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSK
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE0 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVS
140 150 160 170 180 190
100 110 120
pF1KE0 VSTPIADIYEQEKDEDGFLYMVYASQETFGF
:::::::::::::::::::::::::::::::
XP_011 VSTPIADIYEQEKDEDGFLYMVYASQETFGF
200 210 220
>>NP_852610 (OMIM: 601242) microtubule-associated protei (125 aa)
initn: 711 init1: 711 opt: 711 Z-score: 944.9 bits: 180.3 E(85289): 6.8e-46
Smith-Waterman score: 711; 100.0% identity (100.0% similar) in 108 aa overlap (14-121:18-125)
10 20 30 40 50
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD
:::::::::::::::::::::::::::::::::::::::::::
NP_852 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ
70 80 90 100 110 120
120
pF1KE0 ETFGF
:::::
NP_852 ETFGF
>>NP_073729 (OMIM: 609604) microtubule-associated protei (125 aa)
initn: 669 init1: 669 opt: 669 Z-score: 889.8 bits: 170.1 E(85289): 8e-43
Smith-Waterman score: 669; 82.5% identity (95.0% similar) in 120 aa overlap (1-120:1-120)
10 20 30 40 50 60
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
:::.. :::::.: .: ..:. ::.:::.:::::::::::::::::::::::::::::::
NP_073 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
:::.:::::::::: .:::::::: ::::::::::...::.:::::::::::::::::::
NP_073 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
70 80 90 100 110 120
pF1KE0 F
NP_073 MKLSV
>>XP_005273196 (OMIM: 609605) PREDICTED: microtubule-ass (147 aa)
initn: 466 init1: 466 opt: 466 Z-score: 622.3 bits: 120.8 E(85289): 6.4e-28
Smith-Waterman score: 466; 59.2% identity (85.0% similar) in 120 aa overlap (1-120:7-126)
10 20 30 40 50
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLV
.:: ::::::.:.: : .:: :: . :.::::..::: : :: ::::::::
XP_005 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 PDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYA
:....:.....::: :. : :.::.::::..:.::.:. .:.::.. ::::::.::.::
XP_005 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
70 80 90 100 110 120
120
pF1KE0 SQETFGF
::::::
XP_005 SQETFGCLESAAPRDGSSLEDRPCNPL
130 140
>>NP_001004343 (OMIM: 609605) microtubule-associated pro (147 aa)
initn: 466 init1: 466 opt: 466 Z-score: 622.3 bits: 120.8 E(85289): 6.4e-28
Smith-Waterman score: 466; 59.2% identity (85.0% similar) in 120 aa overlap (1-120:7-126)
10 20 30 40 50
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLV
.:: ::::::.:.: : .:: :: . :.::::..::: : :: ::::::::
NP_001 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 PDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYA
:....:.....::: :. : :.::.::::..:.::.:. .:.::.. ::::::.::.::
NP_001 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
70 80 90 100 110 120
120
pF1KE0 SQETFGF
::::::
NP_001 SQETFGCLESAAPRDGSSLEDRPCNPL
130 140
>>NP_009216 (OMIM: 607452) gamma-aminobutyric acid recep (117 aa)
initn: 328 init1: 127 opt: 332 Z-score: 448.0 bits: 88.3 E(85289): 3.3e-18
Smith-Waterman score: 332; 41.7% identity (80.9% similar) in 115 aa overlap (7-121:5-117)
10 20 30 40 50 60
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
::. .:. :: : .:: ..:...:::.:. .: .:. .:: :.:::. ...
NP_009 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSG-SQIVDIDKRKYLVPSDITV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
.... :::.:.:: .:.::.:.. .. . : ....::.:::::::::..:....:::
NP_009 AQFMWIIRKRIQLPSEKAIFLFVDK-TVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG
60 70 80 90 100 110
pF1KE0 F
:
NP_009 F
>>NP_113600 (OMIM: 607420) gamma-aminobutyric acid recep (117 aa)
initn: 260 init1: 123 opt: 270 Z-score: 366.6 bits: 73.2 E(85289): 1.1e-13
Smith-Waterman score: 270; 34.2% identity (78.9% similar) in 114 aa overlap (7-120:5-116)
10 20 30 40 50 60
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
.:. . : : :: ..:: ..:...:::.:. . ..: ::: :.:::. ...
NP_113 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
... .::.:..: : .:.:..:: ... .:. ....::....:: :::..:... ..:
NP_113 GQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
60 70 80 90 100 110
pF1KE0 F
NP_113 K
121 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:58:27 2016 done: Fri Nov 4 01:58:27 2016
Total Scan time: 4.170 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]