FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0120, 287 aa
  1>>>pF1KE0120 287 - 287 aa - 287 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7557+/-0.000375; mu= 18.4745+/- 0.023
 mean_var=61.7795+/-11.812, 0's: 0 Z-trim(112.7): 20  B-trim: 33 in 1/51
 Lambda= 0.163174
 statistics sampled from 21662 (21665) to 21662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.254), width:  16
 Scan time:  7.310

The best scores are:                                      opt bits E(85289)
NP_078865 (OMIM: 226750,614574) protein rogdi homo ( 287) 1885 452.2 5.2e-127
XP_006721010 (OMIM: 226750,614574) PREDICTED: prot ( 294) 1854 444.9 8.4e-125
XP_006721011 (OMIM: 226750,614574) PREDICTED: prot ( 204) 1282 310.1 2.2e-84


>>NP_078865 (OMIM: 226750,614574) protein rogdi homolog   (287 aa)
 initn: 1885 init1: 1885 opt: 1885  Z-score: 2401.2  bits: 452.2 E(85289): 5.2e-127
Smith-Waterman score: 1885; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)

               10        20        30        40        50        60
pF1KE0 MATVMAATAAERAVLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MATVMAATAAERAVLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FILGSCGTDQVKGVLTLQGDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 FILGSCGTDQVKGVLTLQGDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SQAIYLLTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 SQAIYLLTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 APALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGSQRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 APALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGSQRLE
              190       200       210       220       230       240

              250       260       270       280       
pF1KE0 VSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKISVFSSYWSYRPF
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_078 VSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKISVFSSYWSYRPF
              250       260       270       280       

>>XP_006721010 (OMIM: 226750,614574) PREDICTED: protein   (294 aa)
 initn: 1492 init1: 1492 opt: 1854  Z-score: 2361.6  bits: 444.9 E(85289): 8.4e-125
Smith-Waterman score: 1854; 97.3% identity (97.6% similar) in 294 aa overlap (1-287:1-294)

               10        20        30        40        50        60
pF1KE0 MATVMAATAAERAVLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MATVMAATAAERAVLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FILGSCGTDQVKGVLTLQGDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FILGSCGTDQVKGVLTLQGDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SQAIYLLTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQAIYLLTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMF
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KE0 APALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMF-------E
       :::::::::::::::::::::::::::::::::::::::::::::::::::.       :
XP_006 APALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMLDPLTAHSE
              190       200       210       220       230       240

           240       250       260       270       280       
pF1KE0 WGSQRLEVSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKISVFSSYWSYRPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WGSQRLEVSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKISVFSSYWSYRPF
              250       260       270       280       290    

>>XP_006721011 (OMIM: 226750,614574) PREDICTED: protein   (204 aa)
 initn: 920 init1: 920 opt: 1282  Z-score: 1636.0  bits: 310.1 E(85289): 2.2e-84
Smith-Waterman score: 1282; 96.1% identity (96.6% similar) in 204 aa overlap (91-287:1-204)

               70        80        90       100       110       120
pF1KE0 FILGSCGTDQVKGVLTLQGDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHV
                                     ::::::::::::::::::::::::::::::
XP_006                               MPRNNQLLHFAFREDKQWKLQQIQDARNHV
                                             10        20        30

              130       140       150       160       170       180
pF1KE0 SQAIYLLTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQAIYLLTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMF
               40        50        60        70        80        90

              190       200       210       220       230          
pF1KE0 APALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMF-------E
       :::::::::::::::::::::::::::::::::::::::::::::::::::.       :
XP_006 APALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMLDPLTAHSE
              100       110       120       130       140       150

           240       250       260       270       280       
pF1KE0 WGSQRLEVSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKISVFSSYWSYRPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WGSQRLEVSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKISVFSSYWSYRPF
              160       170       180       190       200    




287 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:12:16 2016 done: Fri Nov  4 02:12:17 2016
 Total Scan time:  7.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]