FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0110, 259 aa
  1>>>pF1KE0110 259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1997+/-0.000734; mu= 14.9843+/- 0.044
 mean_var=59.9716+/-11.756, 0's: 0 Z-trim(108.1): 18  B-trim: 0 in 0/51
 Lambda= 0.165616
 statistics sampled from 9951 (9964) to 9951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.306), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS32829.1 HDHD2 gene_id:84064|Hs108|chr18        ( 259) 1691 412.1 1.9e-115
CCDS7640.1 LHPP gene_id:64077|Hs108|chr10          ( 270)  646 162.4 2.9e-40
CCDS53587.1 LHPP gene_id:64077|Hs108|chr10         ( 210)  481 123.0 1.7e-28
CCDS81519.1 LHPP gene_id:64077|Hs108|chr10         ( 212)  477 122.0 3.3e-28


>>CCDS32829.1 HDHD2 gene_id:84064|Hs108|chr18             (259 aa)
 initn: 1691 init1: 1691 opt: 1691  Z-score: 2186.2  bits: 412.1 E(32554): 1.9e-115
Smith-Waterman score: 1691; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE0 MAACRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRGASVIIRFVTNTTKESKQDLLERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAACRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRGASVIIRFVTNTTKESKQDLLERL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RKLEFDISEDEIFTSLTAARSLLERKQVRPMLLVDDRALPDFKGIQTSDPNAVVMGLAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RKLEFDISEDEIFTSLTAARSLLERKQVRPMLLVDDRALPDFKGIQTSDPNAVVMGLAPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 HFHYQILNQAFRLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDTKATVVGKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HFHYQILNQAFRLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDTKATVVGKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTGKYRASDEEKINPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTGKYRASDEEKINPPP
              190       200       210       220       230       240

              250         
pF1KE0 YLTCESFPHAVDHILQHLL
       :::::::::::::::::::
CCDS32 YLTCESFPHAVDHILQHLL
              250         

>>CCDS7640.1 LHPP gene_id:64077|Hs108|chr10               (270 aa)
 initn: 637 init1: 353 opt: 646  Z-score: 836.5  bits: 162.4 E(32554): 2.9e-40
Smith-Waterman score: 646; 43.6% identity (70.4% similar) in 257 aa overlap (7-257:11-267)

                   10        20            30        40        50  
pF1KE0     MAACRALKAVLVDLSGTLHIEDA----AVPGAQEALKRLRGASVIIRFVTNTTKES
                 ...::.:.::.:.   :    :. :. ::. ::. . . .:: :: ...:
CCDS76 MAPWGKRLAGVRGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESQKS
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KE0 KQDLLERLRKLEFDISEDEIFTSLTAARSLLERKQVRPMLLVDDRALPDFKGIQTSDPNA
       . .:. .:..: :::::.:. .   :: ..:... .::.::. : .  .:  :.::.:: 
CCDS76 RAELVGQLQRLGFDISEQEVTAPAPAACQILKEQGLRPYLLIHDGVRSEFDQIDTSNPNC
               70        80        90       100       110       120

            120       130         140       150       160       170
pF1KE0 VVMGLAPEHFHYQILNQAFRLLLD-GAP-LIAIHKARYYKRKDGLALGPGPFVTALEYAT
       ::.. : : : :: .:.::..:..   : ::.. :.::::. .:: :  ::.. ::::: 
CCDS76 VVIADAGESFSYQNMNNAFQVLMELEKPVLISLGKGRYYKETSGLMLDVGPYMKALEYAC
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KE0 DTKATVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTGKYRA
         :: :::::   ::  ::.. : : ..:::::::   ::::::  :: .. :.:::.: 
CCDS76 GIKAEVVGKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKFRP
              190       200       210       220       230       240

              240       250          
pF1KE0 SDEEKINPPPYLTCESFPHAVDHILQHLL 
       :::.. .       ... .::: .:::   
CCDS76 SDEHHPEVKADGYVDNLAEAVDLLLQHADK
              250       260       270

>>CCDS53587.1 LHPP gene_id:64077|Hs108|chr10              (210 aa)
 initn: 472 init1: 271 opt: 481  Z-score: 625.1  bits: 123.0 E(32554): 1.7e-28
Smith-Waterman score: 481; 42.2% identity (70.9% similar) in 199 aa overlap (7-199:11-209)

                   10        20            30        40        50  
pF1KE0     MAACRALKAVLVDLSGTLHIEDA----AVPGAQEALKRLRGASVIIRFVTNTTKES
                 ...::.:.::.:.   :    :. :. ::. ::. . . .:: :: ...:
CCDS53 MAPWGKRLAGVRGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESQKS
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KE0 KQDLLERLRKLEFDISEDEIFTSLTAARSLLERKQVRPMLLVDDRALPDFKGIQTSDPNA
       . .:. .:..: :::::.:. .   :: ..:... .::.::. : .  .:  :.::.:: 
CCDS53 RAELVGQLQRLGFDISEQEVTAPAPAACQILKEQGLRPYLLIHDGVRSEFDQIDTSNPNC
               70        80        90       100       110       120

            120       130         140       150       160       170
pF1KE0 VVMGLAPEHFHYQILNQAFRLLLD-GAP-LIAIHKARYYKRKDGLALGPGPFVTALEYAT
       ::.. : : : :: .:.::..:..   : ::.. :.::::. .:: :  ::.. ::::: 
CCDS53 VVIADAGESFSYQNMNNAFQVLMELEKPVLISLGKGRYYKETSGLMLDVGPYMKALEYAC
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KE0 DTKATVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTGKYRA
         :: :::::   ::  ::.. : : ..:                               
CCDS53 GIKAEVVGKPSPEFFKSALQAIGVEAHQAQ                              
              190       200       210                              

>>CCDS81519.1 LHPP gene_id:64077|Hs108|chr10              (212 aa)
 initn: 468 init1: 271 opt: 477  Z-score: 619.9  bits: 122.0 E(32554): 3.3e-28
Smith-Waterman score: 477; 41.1% identity (70.3% similar) in 202 aa overlap (7-202:11-212)

                   10        20            30        40        50  
pF1KE0     MAACRALKAVLVDLSGTLHIEDA----AVPGAQEALKRLRGASVIIRFVTNTTKES
                 ...::.:.::.:.   :    :. :. ::. ::. . . .:: :: ...:
CCDS81 MAPWGKRLAGVRGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESQKS
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KE0 KQDLLERLRKLEFDISEDEIFTSLTAARSLLERKQVRPMLLVDDRALPDFKGIQTSDPNA
       . .:. .:..: :::::.:. .   :: ..:... .::.::. : .  .:  :.::.:: 
CCDS81 RAELVGQLQRLGFDISEQEVTAPAPAACQILKEQGLRPYLLIHDGVRSEFDQIDTSNPNC
               70        80        90       100       110       120

            120       130         140       150       160       170
pF1KE0 VVMGLAPEHFHYQILNQAFRLLLD-GAP-LIAIHKARYYKRKDGLALGPGPFVTALEYAT
       ::.. : : : :: .:.::..:..   : ::.. :.::::. .:: :  ::.. ::::: 
CCDS81 VVIADAGESFSYQNMNNAFQVLMELEKPVLISLGKGRYYKETSGLMLDVGPYMKALEYAC
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KE0 DTKATVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTGKYRA
         :: :::::   ::  ::.. : : .. . .                            
CCDS81 GIKAEVVGKPSPEFFKSALQAIGVEAHQLLSV                            
              190       200       210                              

              240       250         
pF1KE0 SDEEKINPPPYLTCESFPHAVDHILQHLL




259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:49:16 2016 done: Fri Nov  4 02:49:16 2016
 Total Scan time:  2.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]